Factsheet for Zm00001d038280_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 2
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d005332_P001
Zm00001d018144_P003

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G09800.1	Zm00001d005332_P001	AT4G33945.1	21798944
AT5G09800.1	Zm00001d018144_P003	AT4G33945.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG22102	Sorghum	mitochondrion	94.69	93.65
Os05t0439400-01	Rice	plasma membrane	88.27	88.27
TraesCS1A01G274800.1	Wheat	mitochondrion	84.73	84.55
TraesCS1D01G274600.1	Wheat	mitochondrion	84.51	84.33
TraesCS1B01G284200.1	Wheat	mitochondrion	84.51	84.33
HORVU1Hr1G074180.1	Barley	mitochondrion, plastid	84.07	83.89
GSMUA_Achr5P01020_001	Banana	cytosol	38.94	43.89
Zm00001d019807_P001	Maize	extracellular	7.74	37.23
Zm00001d050689_P001	Maize	cytosol	35.18	37.06
Zm00001d016719_P001	Maize	cytosol	34.73	36.6
Zm00001d025379_P001	Maize	cytosol, mitochondrion, peroxisome, plastid	35.4	36.04
VIT_18s0166g00190.t01	Wine grape	plasma membrane	27.65	31.25
VIT_04s0044g00870.t01	Wine grape	cytosol	28.32	31.07
KRH53869	Soybean	cytosol	28.54	30.94
KRH70331	Soybean	mitochondrion	27.65	30.71
KRH08734	Soybean	mitochondrion	27.88	30.43
PGSC0003DMT400002079	Potato	cytosol	28.1	30.38
Solyc04g071030.1.1	Tomato	cytosol	27.43	29.04
CDX92262	Canola	cytosol	26.33	28.81
KRH59546	Soybean	cytosol	26.11	28.23
Bra022347.1-P	Field mustard	cytosol	26.33	28.07
KRH43397	Soybean	cytosol	25.89	27.99
AT3G18710.1	Thale cress	cytosol	25.66	27.95
Solyc11g005700.1.1	Tomato	cytosol	25.89	27.86
Bra001717.1-P	Field mustard	cytosol	26.11	27.83
CDX82332	Canola	cytosol	26.11	27.83
CDX99325	Canola	cytosol	25.89	27.66
CDY71041	Canola	cytosol	25.22	27.6
CDX75980	Canola	cytosol	25.89	27.59
CDX84538	Canola	cytosol	25.44	27.45
Zm00001d050712_P001	Maize	extracellular, plastid	24.78	27.38
PGSC0003DMT400065698	Potato	cytosol	25.44	27.38
Zm00001d016764_P001	Maize	extracellular	25.22	27.27
Bra037568.1-P	Field mustard	cytosol	24.78	27.12
Bra024318.1-P	Field mustard	cytosol	25.0	26.97
CDY08864	Canola	cytosol	25.0	26.97
KRH36899	Soybean	cytosol	22.12	26.95
AT5G09800.1	Thale cress	cytosol	23.89	26.41
Zm00001d003624_P001	Maize	cytosol	23.23	26.25
Zm00001d001769_P001	Maize	cytosol, endoplasmic reticulum, peroxisome	22.57	26.02
Zm00001d042738_P001	Maize	cytosol	23.45	25.98
AT5G64660.1	Thale cress	cytosol	24.11	25.95
Zm00001d026040_P001	Maize	cytosol	23.45	25.92
Zm00001d002498_P001	Maize	cytosol	23.01	25.06
Zm00001d044734_P001	Maize	mitochondrion	23.45	23.98
Zm00001d030251_P001	Maize	cytosol	22.79	23.2
Zm00001d016730_P001	Maize	cytosol	22.35	23.17
Zm00001d003745_P001	Maize	nucleus	22.57	22.77
Zm00001d028374_P001	Maize	mitochondrion	22.12	22.37
Zm00001d017671_P001	Maize	cytosol	20.35	21.65
Zm00001d017976_P001	Maize	mitochondrion	21.46	21.46
Zm00001d028294_P001	Maize	cytosol	21.24	20.91
Zm00001d048008_P001	Maize	cytosol	21.24	20.73
Zm00001d000044_P001	Maize	cytosol	9.96	19.48
Zm00001d023480_P001	Maize	cytosol	21.24	17.17

Protein Annotations

EntrezGene:103631535	Gene3D:3.30.40.10	MapMan:35.1	UniProt:A0A1D6M516	ProteinID:AQK86217.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR003613	InterPro:IPR013083	PFAM:PF04564
PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF21	SMART:SM00504	SUPFAM:SSF57850	UniParc:UPI0002219E7E
InterPro:Ubox_domain	EnsemblPlantsGene:Zm00001d038280	EnsemblPlants:Zm00001d038280_P001	EnsemblPlants:Zm00001d038280_T001	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

U-box domain-containing protein 29

Coordinates

chr6:+:153171029..153172387

Molecular Weight (calculated)

46421.4 Da

IEP (calculated)

7.997

GRAVY (calculated)

0.227

Length

452 amino acids

Sequence
(BLAST)

001: MDAAIAGQQA RRRIQPPEPL VMAGTPPTPA AFRCPISLEV MRSPVSLPTG ATYDRASIQR WLDSGHRTCP ATRLPLASTD LVPNLLLRRL IHLHAATLPP
101: SPSPEEVLSQ LAAADGEPAA AEKAVRSLAA KIAPEKGKRA SVASAVSADL DSAVPALLSF AKGGAGADAR VDAVRVLATV APELVPYLTG DGTENRDRVS
201: MAVEALAAVL SAEGIAEEAR EGLVLALVAE DLGRVVTTLL GAGANGAAVL EAMLTSARVD ADAKTAIADR PELFPDLVRI LRDAASQAAI RCMVAAVQVR
301: GRPARASMVR AGAVPALALA VAAAPTAAAE SALRLLAEAA RCGDGKAAIG ADAAEVAAAV MGRMIRVGPA GREAAVVALW LCCCAGGGDR RMREAVASAP
401: EAVGKLLVVM QGDCAPTTSR MAGELLRAVR MEHEKKGMAA AYDSRTIHVM PY

Best Arabidopsis Sequence Match ( AT3G18710.1 )
(BLAST)

001: MGRDETETYI TVPSFFKCPI SLDVMRSPVS LCTGVTYDRA SIQRWLDGGN NTCPATMQLL KTKDFVPNLT LQRLINIWSD SIGRRHNGDS PVLNPPSGRE
101: VPTKEEVNVL LERLMSLENL MKIVRFVKDS DSNREFLSKK MEFVPMLVDI IRTKKTKIEL VIMAIRILDS IKVDRERLSN LMLANDGGDC LTAILLAIQR
201: GNLESKIESV RVLDWISFDA KSKLMIAERD GVLTEMMKSI SITESSDPSL IEASLSFLIT ISKSKRVRSK LIAAKAITKI KDILLTETLT NVAVTEKSLK
301: LLETLSSKRE GRLEICGDDN GRCVEGVVKK LLKVSTTATE HAVTILWCLC YVFREDKTVE ETVERSNGVT KLLVVIQSNC SAMVRQMAKD LIKVLKFNSS
401: ALAAYETKTT HIMPF

Arabidopsis Description

PUB29RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178VJJ8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.