Factsheet for Bra001717.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
nucleus 1
mitochondrion 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, vacuole
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	vacuole
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX82332	Canola	cytosol	98.82	98.82
Bra037568.1-P	Field mustard	cytosol	77.12	79.18
Bra022347.1-P	Field mustard	cytosol	76.89	76.89
AT3G18710.1	Thale cress	cytosol	74.29	75.9
Bra024318.1-P	Field mustard	cytosol	54.25	54.89
VIT_04s0044g00870.t01	Wine grape	cytosol	48.58	50.0
KRH43397	Soybean	cytosol	49.06	49.76
KRH59546	Soybean	cytosol	48.58	49.28
KRH53869	Soybean	cytosol	47.88	48.68
GSMUA_Achr8P30420_001	Banana	mitochondrion	29.48	45.79
KRH36899	Soybean	cytosol	37.97	43.4
PGSC0003DMT400065698	Potato	cytosol	42.22	42.62
Solyc11g005700.1.1	Tomato	cytosol	41.98	42.38
GSMUA_Achr6P18140_001	Banana	cytosol	34.2	35.45
GSMUA_Achr10P...	Banana	plastid	32.08	35.42
GSMUA_Achr5P01020_001	Banana	cytosol	33.02	34.91
Zm00001d016719_P001	Maize	cytosol	33.02	32.63
TraesCS2B01G315100.1	Wheat	cytosol	33.49	32.2
TraesCS2A01G298600.1	Wheat	cytosol, mitochondrion, plastid	33.49	32.2
TraesCS2D01G296700.1	Wheat	cytosol, mitochondrion, plastid	33.49	32.2
Os04t0418500-01	Rice	plastid	33.73	31.71
Zm00001d050689_P001	Maize	cytosol	31.84	31.47
EES05205	Sorghum	cytosol	33.49	31.35
OQU81548	Sorghum	mitochondrion	32.78	31.1
Zm00001d025379_P001	Maize	cytosol, mitochondrion, peroxisome, plastid	32.08	30.63
Os02t0540700-00	Rice	plastid	33.02	27.72
HORVU2Hr1G074130.1	Barley	plastid	33.25	27.22
Os05t0439400-01	Rice	plasma membrane	28.54	26.77
KXG22102	Sorghum	mitochondrion	28.77	26.7
Zm00001d038280_P001	Maize	cytosol	27.83	26.11
Bra012803.1-P	Field mustard	cytosol	25.94	26.0
Bra023044.1-P	Field mustard	cytosol	24.76	25.67
TraesCS1B01G284200.1	Wheat	mitochondrion	27.12	25.39
HORVU1Hr1G074180.1	Barley	mitochondrion, plastid	26.89	25.17
TraesCS1D01G274600.1	Wheat	mitochondrion	26.89	25.17
TraesCS1A01G274800.1	Wheat	mitochondrion	26.65	24.94
Bra022417.1-P	Field mustard	cytosol	24.76	24.88
Bra022415.1-P	Field mustard	cytosol	24.76	24.88
Bra038205.1-P	Field mustard	cytosol	24.29	24.7
Bra017278.1-P	Field mustard	cytosol	23.82	24.51
Bra033430.1-P	Field mustard	cytosol	24.06	24.06
Bra005309.1-P	Field mustard	cytosol	21.7	23.77
Bra006925.1-P	Field mustard	cytosol	24.29	23.68
Bra014206.1-P	Field mustard	cytosol	22.64	22.7
Bra037833.1-P	Field mustard	cytosol	23.58	22.57
Bra025442.1-P	Field mustard	mitochondrion	23.11	22.37
Bra029975.1-P	Field mustard	cytosol	23.11	22.12
Bra039752.1-P	Field mustard	cytosol	21.46	21.56
Bra040605.1-P	Field mustard	mitochondrion	18.87	21.33
Bra038683.1-P	Field mustard	cytosol	22.41	21.25
Bra001424.1-P	Field mustard	cytosol	22.64	20.51
Bra001067.1-P	Field mustard	mitochondrion	17.45	20.11
Bra034806.1-P	Field mustard	cytosol	21.7	19.7

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	InterPro:ARM-like	InterPro:ARM-type_fold	EnsemblPlantsGene:Bra001717
EnsemblPlants:Bra001717.1	EnsemblPlants:Bra001717.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	UniProt:M4CBY7	PFAM:PF04564
PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF20	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850
UniParc:UPI0002540482	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

AT3G18710 (E=7e-154) PUB29, ATPUB29 | PUB29 (PLANT U-BOX 29); ubiquitin-protein ligase

Coordinates

chrA03:-:18019246..18020710

Molecular Weight (calculated)

46976.6 Da

IEP (calculated)

9.464

GRAVY (calculated)

-0.014

Length

424 amino acids

Sequence
(BLAST)

001: MGRDETETYI TVPSLFRCPI SLDVMRSPVS LCTGVTYDRA SIQRWLDGGN NTCPATMQIL RTKEFVPNLT LQRLIKAWSD SVGRRAGVSP PRGILTVEEV
101: NKSLTRLSLE KDDEIRLENL SRIVRFAKDS EANREFLWKR KDFAAMLVHI IATVDGGTRA TAKIKLGLLA IMILDTIIKG GKERDRERLS KLMLTDVGGC
201: LTALLLAIQR GNLETKIESV RVLEMISFDQ KSKVIISERD GIVPELIKSI SSETDPSLME ASLSFLITIS ASKRVRSKLV AEKTITKIKD ILLTETTSVA
301: VTEKSLKLLE TLSSNREGRS EICGGDGGRC VEGVVRKLLK VSATATEHAV TILWCLCYVF REDKRAEETV VRCNGVTKLL VVIQSSCSPV VRQMAKDLIK
401: VLKVNTSASV LSAYETNTTH ITPF

Best Arabidopsis Sequence Match ( AT3G18710.1 )
(BLAST)

001: MGRDETETYI TVPSFFKCPI SLDVMRSPVS LCTGVTYDRA SIQRWLDGGN NTCPATMQLL KTKDFVPNLT LQRLINIWSD SIGRRHNGDS PVLNPPSGRE
101: VPTKEEVNVL LERLMSLENL MKIVRFVKDS DSNREFLSKK MEFVPMLVDI IRTKKTKIEL VIMAIRILDS IKVDRERLSN LMLANDGGDC LTAILLAIQR
201: GNLESKIESV RVLDWISFDA KSKLMIAERD GVLTEMMKSI SITESSDPSL IEASLSFLIT ISKSKRVRSK LIAAKAITKI KDILLTETLT NVAVTEKSLK
301: LLETLSSKRE GRLEICGDDN GRCVEGVVKK LLKVSTTATE HAVTILWCLC YVFREDKTVE ETVERSNGVT KLLVVIQSNC SAMVRQMAKD LIKVLKFNSS
401: ALAAYETKTT HIMPF

Arabidopsis Description

PUB29RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178VJJ8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.