Factsheet for Bra037568.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY71041	Canola	cytosol	97.58	97.58
Bra001717.1-P	Field mustard	cytosol	79.18	77.12
Bra022347.1-P	Field mustard	cytosol	78.45	76.42
AT3G18710.1	Thale cress	cytosol	76.76	76.39
Bra024318.1-P	Field mustard	cytosol	54.0	53.22
VIT_04s0044g00870.t01	Wine grape	cytosol	47.94	48.06
KRH53869	Soybean	cytosol	46.25	45.8
KRH43397	Soybean	cytosol	45.52	44.98
KRH59546	Soybean	cytosol	45.28	44.74
GSMUA_Achr8P30420_001	Banana	mitochondrion	28.57	43.22
PGSC0003DMT400065698	Potato	cytosol	41.4	40.71
KRH36899	Soybean	cytosol	36.56	40.7
Solyc11g005700.1.1	Tomato	cytosol	41.16	40.48
GSMUA_Achr10P...	Banana	plastid	32.2	34.64
GSMUA_Achr6P18140_001	Banana	cytosol	32.2	32.52
GSMUA_Achr5P01020_001	Banana	cytosol	31.48	32.42
OQU81548	Sorghum	mitochondrion	33.17	30.65
TraesCS2B01G315100.1	Wheat	cytosol	32.69	30.61
Zm00001d016719_P001	Maize	cytosol	31.72	30.54
Zm00001d025379_P001	Maize	cytosol, mitochondrion, peroxisome, plastid	32.2	29.95
TraesCS2A01G298600.1	Wheat	cytosol, mitochondrion, plastid	31.96	29.93
TraesCS2D01G296700.1	Wheat	cytosol, mitochondrion, plastid	31.96	29.93
Os04t0418500-01	Rice	plastid	32.2	29.49
Zm00001d050689_P001	Maize	cytosol	30.02	28.9
EES05205	Sorghum	cytosol	31.23	28.48
Os02t0540700-00	Rice	plastid	32.93	26.93
HORVU2Hr1G074130.1	Barley	plastid	32.69	26.06
Os05t0439400-01	Rice	plasma membrane	27.84	25.44
KXG22102	Sorghum	mitochondrion	28.09	25.38
Bra023044.1-P	Field mustard	cytosol	24.94	25.18
TraesCS1B01G284200.1	Wheat	mitochondrion	27.36	24.94
TraesCS1A01G274800.1	Wheat	mitochondrion	27.36	24.94
Zm00001d038280_P001	Maize	cytosol	27.12	24.78
TraesCS1D01G274600.1	Wheat	mitochondrion	27.12	24.72
HORVU1Hr1G074180.1	Barley	mitochondrion, plastid	27.12	24.72
Bra017278.1-P	Field mustard	cytosol	24.46	24.51
Bra012803.1-P	Field mustard	cytosol	24.94	24.35
Bra033430.1-P	Field mustard	cytosol	24.21	23.58
Bra038205.1-P	Field mustard	cytosol	23.73	23.5
Bra025442.1-P	Field mustard	mitochondrion	24.7	23.29
Bra005309.1-P	Field mustard	cytosol	21.79	23.26
Bra022417.1-P	Field mustard	cytosol	23.73	23.22
Bra022415.1-P	Field mustard	cytosol	23.73	23.22
Bra006925.1-P	Field mustard	cytosol	23.97	22.76
Bra037833.1-P	Field mustard	cytosol	23.73	22.12
Bra029975.1-P	Field mustard	cytosol	23.24	21.67
Bra039752.1-P	Field mustard	cytosol	22.03	21.56
Bra014206.1-P	Field mustard	cytosol	22.03	21.51
Bra038683.1-P	Field mustard	cytosol	22.52	20.81
Bra001424.1-P	Field mustard	cytosol	22.76	20.09
Bra040605.1-P	Field mustard	mitochondrion	17.68	19.47
Bra034806.1-P	Field mustard	cytosol	20.82	18.42
Bra001067.1-P	Field mustard	mitochondrion	15.74	17.66

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	InterPro:ARM-like	InterPro:ARM-type_fold	EnsemblPlantsGene:Bra037568
EnsemblPlants:Bra037568.1	EnsemblPlants:Bra037568.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	UniProt:M4F905	PFAM:PF04564
PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF20	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850
UniParc:UPI0002544E7A	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

AT3G18710 (E=2e-129) PUB29, ATPUB29 | PUB29 (PLANT U-BOX 29); ubiquitin-protein ligase

Coordinates

chrA01:+:21997315..21998556

Molecular Weight (calculated)

45847.0 Da

IEP (calculated)

8.308

GRAVY (calculated)

-0.051

Length

413 amino acids

Sequence
(BLAST)

001: MGTETYITVP SFFKCPISLD VMRSPVSLCT GVTYDRASIQ RWLDGGNNTC PATMQVLRTK EFIPNLTLQR LIKAWSDSLG RYAAASPPPD PTTDEVNESL
101: RRLSLEKDDE IRLEILVRFV KDWDANRARK DLVPMLVDII AGGTRTTTKT KLVLLAIKIL NSIIKGGSEG DRKRLSNLML TNGDGDCLTE ILLAIQRGNL
201: ESKIESVRVL EVISSIDTQT KLIVAERDEI LTEVIESIST ESDPSLIEAS LSFLITIAKS KRVRSKLITA KTITKIKDIL LTEEITSVAV TEKSLKLLET
301: LSSRREGRSE ICGRDGGRCV EGVVRKLLKV STTATEHAVT ILWCLCYVFG EEKRVEETVE RSNGVTKLLV VIQSNCSPMV RQMAKDVIKV LKVKPSASDL
401: VAYETTTTHI MPF

Best Arabidopsis Sequence Match ( AT3G18710.1 )
(BLAST)

001: MGRDETETYI TVPSFFKCPI SLDVMRSPVS LCTGVTYDRA SIQRWLDGGN NTCPATMQLL KTKDFVPNLT LQRLINIWSD SIGRRHNGDS PVLNPPSGRE
101: VPTKEEVNVL LERLMSLENL MKIVRFVKDS DSNREFLSKK MEFVPMLVDI IRTKKTKIEL VIMAIRILDS IKVDRERLSN LMLANDGGDC LTAILLAIQR
201: GNLESKIESV RVLDWISFDA KSKLMIAERD GVLTEMMKSI SITESSDPSL IEASLSFLIT ISKSKRVRSK LIAAKAITKI KDILLTETLT NVAVTEKSLK
301: LLETLSSKRE GRLEICGDDN GRCVEGVVKK LLKVSTTATE HAVTILWCLC YVFREDKTVE ETVERSNGVT KLLVVIQSNC SAMVRQMAKD LIKVLKFNSS
401: ALAAYETKTT HIMPF

Arabidopsis Description

PUB29RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178VJJ8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.