Factsheet for Bra001424.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX73849	Canola	cytosol	99.15	99.36
Bra038683.1-P	Field mustard	cytosol	75.21	78.75
Bra034806.1-P	Field mustard	cytosol	77.14	77.3
AT3G11840.1	Thale cress	cytosol	74.79	76.75
VIT_08s0105g00200.t01	Wine grape	cytosol	42.73	49.26
KRH72180	Soybean	cytosol	23.08	46.55
KRH68013	Soybean	cytosol	27.56	43.58
GSMUA_Achr11P...	Banana	cytosol	32.05	40.98
Bra023044.1-P	Field mustard	cytosol	34.62	39.61
Bra017278.1-P	Field mustard	cytosol	34.83	39.56
Solyc01g007050.1.1	Tomato	cytosol	35.47	39.43
PGSC0003DMT400054946	Potato	cytosol	35.26	39.19
Bra005309.1-P	Field mustard	cytosol	30.98	37.47
Bra012803.1-P	Field mustard	cytosol	32.05	35.46
Bra033430.1-P	Field mustard	cytosol	31.84	35.14
Bra006925.1-P	Field mustard	cytosol	31.84	34.25
Bra038205.1-P	Field mustard	cytosol	23.29	26.14
Bra014206.1-P	Field mustard	cytosol	23.5	26.0
Bra022417.1-P	Field mustard	cytosol	23.29	25.83
Bra022415.1-P	Field mustard	cytosol	23.29	25.83
Bra025442.1-P	Field mustard	mitochondrion	23.93	25.57
Bra039752.1-P	Field mustard	cytosol	22.44	24.88
Bra024318.1-P	Field mustard	cytosol	21.37	23.87
Bra022347.1-P	Field mustard	cytosol	21.37	23.58
Bra037568.1-P	Field mustard	cytosol	20.09	22.76
Bra001717.1-P	Field mustard	cytosol	20.51	22.64
Bra029975.1-P	Field mustard	cytosol	21.37	22.57
Bra001067.1-P	Field mustard	mitochondrion	17.52	22.28
Bra040605.1-P	Field mustard	mitochondrion	17.09	21.33
Bra037833.1-P	Field mustard	cytosol	19.87	20.99

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	EnsemblPlantsGene:Bra001424
EnsemblPlants:Bra001424.1	EnsemblPlants:Bra001424.1-P	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	UniProt:M4CB45
PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF24	SMART:SM00504	SUPFAM:SSF48371
SUPFAM:SSF57850	UniParc:UPI0002540789	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

AT3G11840 (E=2e-191) PUB24 | PUB24 (PLANT U-BOX 24); binding / ubiquitin-protein ligase

Coordinates

chrA03:-:16307497..16309687

Molecular Weight (calculated)

52574.0 Da

IEP (calculated)

6.385

GRAVY (calculated)

-0.079

Length

468 amino acids

Sequence
(BLAST)

001: MDHEDEEIEI PNYFICPISL DIMKDPVIAV SGITYDRESI DKWLEKVSSC PVTKQPLSSD SDLTPNHTLR RLIQHWCVEN ATLGVVRIPT PRIPPGKPNV
101: VEEIKNLKKF GDEALAREDT LRKLEVLAME GETNRRLMHE GGVHRLLILF VVKCTRKEEE EEEAQRRIKV QLDESLRLLH MIGVPLNDAR TILMENDQIL
201: ESLSLVLNQQ NFLNKAYTIV LLRNLTENTS SHIVERLNPE ILKGIIGFLK EVVSSFNRTS PNVSDTAQSS NPRVRNKVHS KLDYNLVIKQ AVTAALMILL
301: ETSSWSRNKH ILIELGAVSQ LIELEISSTG EKRATELVLG VLSRLCCCTN GRAEILAHGG GLAIVTKRLF GVSIAADDRA LFILSTVSKL SPEKAVVEEM
401: VCVGTVEKLC TVLRVDCGLS LKEKAKEILS DHFDELKKFP CIDVRLLTKF ISSSHEDLLA EFYSKLNV

Best Arabidopsis Sequence Match ( AT3G11840.1 )
(BLAST)

001: MDQEEEEIEI PNYFICPISL EIMKDPVTTV SGITYDRQNI VKWLEKVPSC PVTKQPLPLD SDLTPNHMLR RLIQHWCVEN ETRGVVRIST PRVPPGKLNV
101: VEEIKNLKKF GQEALGREET LQKLEVLAMD GNNRRLMCEC GVHKSLILFV VKCTSEDEDG RRRIKGLDES LRLLHLIGIP SNDAKTILME NDRVMESLTW
201: VLHQEDFLSK AYTIVLLRNL TEYTSSHIVE RLNPEIFKGI IGFLKDVVNS VNRTSPTVRE TVQSSSRPSL GKTEPSKLDH SLVIKQAVTA ALMILLETSS
301: WSRNRSLLVD LGAVSELIEL EISYTGEKRI TELMLGVLSR LCCCANGRAE ILAHRGGIAV VTKRLLRVSP AADDRAISIL TTVSKFSPEN MVVEEMVNVG
401: TVEKLCSVLG MDCGLNLKEK AKEILKDHFD EWKKFPCIDI TLLTKLLSIS PKGPKI

Arabidopsis Description

PUB24E3 ubiquitin-protein ligase PUB24 [Source:UniProtKB/Swiss-Prot;Acc:Q9SF15]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.