Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400054946 | Potato | cytosol | 93.11 | 93.11 |
| VIT_08s0105g00200.t01 | Wine grape | cytosol | 49.88 | 51.72 |
| KRH72180 | Soybean | cytosol | 25.89 | 46.98 |
| KRH68013 | Soybean | cytosol | 33.02 | 46.96 |
| Solyc06g074140.1.1 | Tomato | cytosol | 43.71 | 43.81 |
| Solyc01g009320.1.1 | Tomato | cytosol | 42.99 | 43.3 |
| Solyc11g068940.1.1 | Tomato | cytosol | 42.28 | 42.08 |
| GSMUA_Achr11P... | Banana | cytosol | 36.58 | 42.08 |
| Solyc01g007040.2.1 | Tomato | cytosol, nucleus, vacuole | 17.34 | 40.78 |
| CDY47911 | Canola | cytosol | 40.38 | 40.28 |
| CDY67531 | Canola | cytosol | 42.52 | 40.04 |
| CDY01063 | Canola | cytosol | 41.81 | 40.0 |
| Bra038683.1-P | Field mustard | cytosol | 41.57 | 39.15 |
| CDY08490 | Canola | cytosol | 41.09 | 39.14 |
| CDY53920 | Canola | cytosol | 39.19 | 37.84 |
| Bra034806.1-P | Field mustard | cytosol | 41.81 | 37.69 |
| Solyc01g007000.2.1 | Tomato | cytosol, nucleus, vacuole | 36.58 | 37.65 |
| AT3G11840.1 | Thale cress | cytosol | 40.14 | 37.06 |
| Solyc01g007010.2.1 | Tomato | cytosol | 35.87 | 37.01 |
| Solyc01g007020.2.1 | Tomato | cytosol | 35.63 | 36.76 |
| Solyc01g009330.1.1 | Tomato | cytosol | 37.05 | 36.62 |
| CDX73849 | Canola | cytosol | 39.67 | 35.76 |
| Bra001424.1-P | Field mustard | cytosol | 39.43 | 35.47 |
| Solyc11g068920.1.1 | Tomato | cytosol | 33.97 | 35.4 |
| Solyc01g007030.2.1 | Tomato | cytosol | 17.58 | 35.07 |
| Solyc01g080920.2.1 | Tomato | cytosol | 25.42 | 26.16 |
| Solyc01g005160.2.1 | Tomato | mitochondrion | 26.6 | 24.89 |
| Solyc04g008100.1.1 | Tomato | cytosol | 25.89 | 24.66 |
| Solyc01g107980.2.1 | Tomato | cytosol | 23.28 | 23.61 |
| Solyc11g006030.1.1 | Tomato | cytosol | 23.52 | 23.02 |
| Solyc05g056500.1.1 | Tomato | cytosol | 20.67 | 21.7 |
| Solyc11g005700.1.1 | Tomato | cytosol | 21.38 | 21.43 |
| Solyc04g077610.2.1 | Tomato | cytosol | 20.67 | 20.76 |
| Solyc04g071030.1.1 | Tomato | cytosol | 19.95 | 19.67 |
Protein Annotations
| Gene3D:1.25.10.10 | Gene3D:3.30.40.10 | MapMan:35.1 | InterPro:ARM-like | InterPro:ARM-type_fold | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004842 | GO:GO:0005488 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | InterPro:IPR003613 | InterPro:IPR011989 |
| InterPro:IPR013083 | UniProt:K4ASS1 | PFAM:PF04564 | PFscan:PS51698 | PANTHER:PTHR22849 | PANTHER:PTHR22849:SF24 |
| SMART:SM00504 | SUPFAM:SSF48371 | SUPFAM:SSF57850 | EnsemblPlantsGene:Solyc01g007050.1 | EnsemblPlants:Solyc01g007050.1.1 | UniParc:UPI00027626ED |
| InterPro:Ubox_domain | InterPro:Znf_RING/FYVE/PHD | : | : | : | : |
Description
RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:K4ASS1]
Coordinates
chr1:-:1591040..1592454
Molecular Weight (calculated)
47537.9 Da
IEP (calculated)
7.995
GRAVY (calculated)
-0.076
Length
421 amino acids
Sequence
(BLAST)
(BLAST)
001: MENVEIPEYF ICPISLQIMK DPVTVVTGIT YDRDSIECWL SKNPNSNALC PVTKLHVSRD SDLTPNHTLR HLIQSWCVSN GFNVFDQVST PAKPPLSKCY
101: VLNLVLDLSV PGTENIKTLE KLEMLAKENN ERNKTYMVEV GVHEALVNFL IRCYMKCDTN GLEKALSTLS LIWDYFPSCH ENNEVENREE ILIDSITWAL
201: GLDRNMQNHA TIKNHAMSLL RSIIGKANSS TLDRLKPQLL EKIIRVLRES GSNTTTIAQK VVDNALHVIL NTSHSGKNRN IMVQSRAIFE LIELEINFSS
301: NKKTKELIFE ILFNLCSCAD GRAQLLSHAA GIAMITKRIL KVSPIVDEKA IMILYLITKY SATSGVLQEM LKVKSVSKIC TVIQANCASH VKDKAREILR
401: NHFDFWKNSP CVEVATLTRL H
101: VLNLVLDLSV PGTENIKTLE KLEMLAKENN ERNKTYMVEV GVHEALVNFL IRCYMKCDTN GLEKALSTLS LIWDYFPSCH ENNEVENREE ILIDSITWAL
201: GLDRNMQNHA TIKNHAMSLL RSIIGKANSS TLDRLKPQLL EKIIRVLRES GSNTTTIAQK VVDNALHVIL NTSHSGKNRN IMVQSRAIFE LIELEINFSS
301: NKKTKELIFE ILFNLCSCAD GRAQLLSHAA GIAMITKRIL KVSPIVDEKA IMILYLITKY SATSGVLQEM LKVKSVSKIC TVIQANCASH VKDKAREILR
401: NHFDFWKNSP CVEVATLTRL H
001: MDQEEEEIEI PNYFICPISL EIMKDPVTTV SGITYDRQNI VKWLEKVPSC PVTKQPLPLD SDLTPNHMLR RLIQHWCVEN ETRGVVRIST PRVPPGKLNV
101: VEEIKNLKKF GQEALGREET LQKLEVLAMD GNNRRLMCEC GVHKSLILFV VKCTSEDEDG RRRIKGLDES LRLLHLIGIP SNDAKTILME NDRVMESLTW
201: VLHQEDFLSK AYTIVLLRNL TEYTSSHIVE RLNPEIFKGI IGFLKDVVNS VNRTSPTVRE TVQSSSRPSL GKTEPSKLDH SLVIKQAVTA ALMILLETSS
301: WSRNRSLLVD LGAVSELIEL EISYTGEKRI TELMLGVLSR LCCCANGRAE ILAHRGGIAV VTKRLLRVSP AADDRAISIL TTVSKFSPEN MVVEEMVNVG
401: TVEKLCSVLG MDCGLNLKEK AKEILKDHFD EWKKFPCIDI TLLTKLLSIS PKGPKI
101: VEEIKNLKKF GQEALGREET LQKLEVLAMD GNNRRLMCEC GVHKSLILFV VKCTSEDEDG RRRIKGLDES LRLLHLIGIP SNDAKTILME NDRVMESLTW
201: VLHQEDFLSK AYTIVLLRNL TEYTSSHIVE RLNPEIFKGI IGFLKDVVNS VNRTSPTVRE TVQSSSRPSL GKTEPSKLDH SLVIKQAVTA ALMILLETSS
301: WSRNRSLLVD LGAVSELIEL EISYTGEKRI TELMLGVLSR LCCCANGRAE ILAHRGGIAV VTKRLLRVSP AADDRAISIL TTVSKFSPEN MVVEEMVNVG
401: TVEKLCSVLG MDCGLNLKEK AKEILKDHFD EWKKFPCIDI TLLTKLLSIS PKGPKI
Arabidopsis Description
PUB24E3 ubiquitin-protein ligase PUB24 [Source:UniProtKB/Swiss-Prot;Acc:Q9SF15]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.