CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY47911	Canola	cytosol	88.14	93.36
CDY01063	Canola	cytosol	77.4	78.64
CDY08490	Canola	cytosol	76.29	77.15
CDY53920	Canola	cytosol	74.94	76.83
AT3G11840.1	Thale cress	cytosol	76.29	74.78
CDX73849	Canola	cytosol	78.08	74.73
VIT_08s0105g00200.t01	Wine grape	cytosol	46.31	50.99
KRH72180	Soybean	cytosol	24.83	47.84
KRH68013	Soybean	cytosol	30.2	45.61
GSMUA_Achr11P...	Banana	cytosol	35.79	43.72
Solyc01g007050.1.1	Tomato	cytosol	40.04	42.52
PGSC0003DMT400054946	Potato	cytosol	39.82	42.28
CDX84168	Canola	cytosol	36.91	40.64
CDX79645	Canola	cytosol	36.91	40.44
CDY40422	Canola	cytosol	37.14	40.29
CDX75084	Canola	cytosol	36.47	40.15
CDY32070	Canola	cytosol	36.91	40.05
CDX84587	Canola	cytosol	36.47	39.85
CDX95337	Canola	cytosol	34.9	38.14
CDX78096	Canola	cytosol	32.89	37.79
CDY23218	Canola	cytosol	33.33	37.63
CDY59599	Canola	cytosol	34.23	37.41
CDY50158	Canola	cytosol	24.83	26.62
CDX99233	Canola	cytosol, peroxisome, plastid	25.06	26.6
CDX95458	Canola	cytosol	24.61	26.38
CDX92328	Canola	cytosol	24.61	26.0
CDY59286	Canola	cytosol	24.16	25.53
CDY16513	Canola	cytosol	24.16	25.53
CDX92262	Canola	cytosol	22.37	24.21
CDY27655	Canola	mitochondrion	23.04	23.52
CDX99694	Canola	mitochondrion	23.04	23.52
CDY50319	Canola	cytosol	22.15	23.18
CDY08864	Canola	cytosol	21.7	23.15
CDY16432	Canola	cytosol	22.15	23.13
CDX75980	Canola	cytosol	21.92	23.11
CDX84538	Canola	cytosol	21.48	22.91
CDX99325	Canola	cytosol	21.48	22.7
CDX92016	Canola	mitochondrion	18.57	22.55
CDX82332	Canola	cytosol	21.25	22.41
CDY53333	Canola	cytosol	22.37	22.37
CDX83098	Canola	cytosol	22.15	22.35
CDX74232	Canola	cytosol, extracellular, mitochondrion, plastid	18.34	22.28
CDY71041	Canola	cytosol	20.36	22.03
CDY28714	Canola	mitochondrion	18.34	21.87
CDY51529	Canola	mitochondrion	18.12	21.6
CDY69247	Canola	cytosol	20.13	20.32
CDY18670	Canola	cytosol	19.91	20.09

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	GO:A0A078JP87	UniProt:A0A078JP87	InterPro:ARM-like
InterPro:ARM-type_fold	EnsemblPlants:CDY67531	ProteinID:CDY67531	ProteinID:CDY67531.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004842	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00064373001	InterPro:IPR003613	InterPro:IPR011989
InterPro:IPR013083	PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF24	SMART:SM00504
SUPFAM:SSF48371	SUPFAM:SSF57850	UniPathway:UPA00143	UniParc:UPI0004EDDAA9	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

BnaC01g44930DRING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A078JP87]

Coordinates

chrLK036214:-:719..2475

Molecular Weight (calculated)

49797.7 Da

IEP (calculated)

5.959

GRAVY (calculated)

0.017

Length

447 amino acids

Sequence
(BLAST)

001: MDHVDEEIEI PNYFICPISL EIMKDPVTAV SGITYDRQSI VQWLEKVPSC PVTKQPLPLD SDLTPNHTLR RLIQHWCDEN ATHGVARIPT PRAPPGKLNI
101: VEEIKNLKKF VVEDSGREDT LKKLEVLAME GETNRRMMCE AGVHRSLILF VVKCTLEEEE EGQHLKGHVD ESLRLLHLIG VPLNDARALL IENDQILESL
201: TLILHQQDFI NKAYTIVLLR NLTGNASSHT VERFGAEILK GIIGFLKDVV ISSFNVTNPS VSATLQPSSS SVRSKLDRSL VIKRGVTAAL MILLETSSWS
301: QNRTILVDLG AVSELIDLEI SYSGEKRTTE LLLGILSRLC CCADGRAEML SHGGGIAIVT KRVLWVSTVA DDRALSILNL LSKFSPENKV VEEMVCVGTV
401: EKLCSVLRVD CGLSVKEKAK EILRDHFDEW KRFPCIDVPL LTKLLSS

Best Arabidopsis Sequence Match ( AT3G11840.1 )
(BLAST)

001: MDQEEEEIEI PNYFICPISL EIMKDPVTTV SGITYDRQNI VKWLEKVPSC PVTKQPLPLD SDLTPNHMLR RLIQHWCVEN ETRGVVRIST PRVPPGKLNV
101: VEEIKNLKKF GQEALGREET LQKLEVLAMD GNNRRLMCEC GVHKSLILFV VKCTSEDEDG RRRIKGLDES LRLLHLIGIP SNDAKTILME NDRVMESLTW
201: VLHQEDFLSK AYTIVLLRNL TEYTSSHIVE RLNPEIFKGI IGFLKDVVNS VNRTSPTVRE TVQSSSRPSL GKTEPSKLDH SLVIKQAVTA ALMILLETSS
301: WSRNRSLLVD LGAVSELIEL EISYTGEKRI TELMLGVLSR LCCCANGRAE ILAHRGGIAV VTKRLLRVSP AADDRAISIL TTVSKFSPEN MVVEEMVNVG
401: TVEKLCSVLG MDCGLNLKEK AKEILKDHFD EWKKFPCIDI TLLTKLLSIS PKGPKI

Arabidopsis Description

PUB24E3 ubiquitin-protein ligase PUB24 [Source:UniProtKB/Swiss-Prot;Acc:Q9SF15]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.