CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY50158	Canola	cytosol	98.08	98.08
CDX99233	Canola	cytosol, peroxisome, plastid	90.17	89.31
CDX92328	Canola	cytosol	89.69	88.42
AT3G19380.1	Thale cress	cytosol, golgi, plastid	87.05	86.22
CDY16513	Canola	cytosol	81.06	79.91
CDY59286	Canola	cytosol	80.82	79.67
KRH50316	Soybean	cytosol, plasma membrane, plastid	68.35	68.84
KRH70657	Soybean	cytosol	68.11	68.43
Solyc01g107980.2.1	Tomato	cytosol	68.11	68.43
PGSC0003DMT400066588	Potato	cytosol	67.63	67.95
VIT_03s0063g00180.t01	Wine grape	cytosol	66.91	67.23
GSMUA_Achr9P08750_001	Banana	cytosol, plasma membrane, plastid	45.32	54.78
EES06938	Sorghum	extracellular	50.12	51.35
Zm00001d050712_P001	Maize	extracellular, plastid	50.36	51.34
GSMUA_Achr1P13220_001	Banana	cytosol	48.44	51.01
TraesCS6A01G256700.1	Wheat	extracellular	49.4	50.61
TraesCS6B01G268300.1	Wheat	extracellular	49.4	50.61
TraesCS6D01G237900.1	Wheat	extracellular	49.4	50.61
Os02t0548700-00	Rice	cytosol, extracellular, plastid	50.36	50.36
Zm00001d016764_P001	Maize	extracellular	49.16	49.04
GSMUA_Achr6P25670_001	Banana	cytosol	49.64	48.36
CDX78096	Canola	cytosol	29.98	32.13
CDX75084	Canola	cytosol	30.94	31.77
CDX95337	Canola	cytosol	30.94	31.54
CDY59599	Canola	cytosol	30.7	31.3
CDX84587	Canola	cytosol	30.46	31.05
CDX84168	Canola	cytosol	30.22	31.03
CDX79645	Canola	cytosol	30.22	30.88
CDY32070	Canola	cytosol	30.46	30.83
CDY40422	Canola	cytosol	30.46	30.83
CDY23218	Canola	cytosol	29.02	30.56
CDY27655	Canola	mitochondrion	29.74	28.31
CDX99694	Canola	mitochondrion	29.02	27.63
CDX83098	Canola	cytosol	27.34	25.73
CDY53333	Canola	cytosol	27.34	25.5
CDY01063	Canola	cytosol	26.62	25.23
CDY50319	Canola	cytosol	25.66	25.06
CDX92262	Canola	cytosol	24.7	24.94
CDY08490	Canola	cytosol	26.38	24.89
CDY47911	Canola	cytosol	25.18	24.88
CDY69247	Canola	cytosol	26.38	24.83
CDY16432	Canola	cytosol	25.42	24.77
CDY67531	Canola	cytosol	26.38	24.61
CDY18670	Canola	cytosol	26.14	24.61
CDY53920	Canola	cytosol	25.42	24.31
CDX82332	Canola	cytosol	24.7	24.29
CDX99325	Canola	cytosol	24.46	24.11
CDX75980	Canola	cytosol	24.22	23.82
CDX73849	Canola	cytosol	26.62	23.77
CDY71041	Canola	cytosol	23.5	23.73
CDY08864	Canola	cytosol	23.74	23.63
CDX84538	Canola	cytosol	23.5	23.39
CDX74232	Canola	cytosol, extracellular, mitochondrion, plastid	20.38	23.1
CDX92016	Canola	mitochondrion	19.9	22.55
CDY51529	Canola	mitochondrion	19.9	22.13
CDY28714	Canola	mitochondrion	19.66	21.87

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	GO:A0A078E7V8	InterPro:ARM-like	InterPro:ARM-type_fold
EnsemblPlants:CDX95458	ProteinID:CDX95458	ProteinID:CDX95458.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00101226001	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083
PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF56	SMART:SM00504	SUPFAM:SSF48371
SUPFAM:SSF57850	UniPathway:UPA00143	UniParc:UPI0004EDF79E	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

BnaC01g33500D

Coordinates

chrLK031889:+:290715..292241

Molecular Weight (calculated)

45765.1 Da

IEP (calculated)

7.087

GRAVY (calculated)

0.009

Length

417 amino acids

Sequence
(BLAST)

001: MPRSLEPLDL GIQIPYHFRC PISLELMRDP VTVCTGQTYD RTSIESWVST GNNTTCPVTR APLTDFTLIP NHTLRRLIQE WCVANRSNGV ERIPTPKQPA
101: DPTSVRALLS QASATSGTHV SARSRAAALR RLRGFARDSE KNRVLIAAHN AKEILIRILF SDDIDSSELV SESLALLVMF PMTEHDKCVS IISDPGRVEF
201: LTRLLFDSSV ETRVNAAALI EMAVTGSKET VSNSESIFEG VLDLLRNPAS SYPRRALKIG IKALFALCLS KNTRHVAVSA GAPEILIDRL AAGLDRCDTE
301: RALATVEILC RSLEGCAAFG EHALTVPVLV KTILRVSDRA TEYAAGALLA LCTAEDRWRD EAAAAGVVVQ LLLMVQSECT ERAKRKAQKL LKLLRDSWPD
401: YSFANSDDFA CSEVVPF

Best Arabidopsis Sequence Match ( AT3G19380.1 )
(BLAST)

001: MPRNIEPLDL GIQIPYHFRC PISLELMQDP VTVCTGQTYD RASIESWVSI GNNTTCPVTR APLSDFTLIP NHTLRRLIQE WCVANRSNGV ERIPTPKQPA
101: DPTSVRALLS QASAITGTHV SVRSRAAALR RLRGFARDSD KNRVLIAAHN ATEILIKILF SETTSSELVS ESLALLVMLP ITEPNQFVSI SSDPGRVEFL
201: TRLLFDSSIE TRVNAAALIE IVSTGTKSAD LKGSISNSES VFEGVLDLLR NPISSRRALK IGIKTLFALC SVKSTRHIAI TAGAPEILID RLAADFDRCD
301: TERALATVEL LCRTPEGCAA FGEHALTVPL LVKTILRVSD RATEYAAGAL LALCTAEERW REEAAGAGVV VQLLLMVQSE CTERAKKKAQ KLLKLLRDSW
401: PDYNSFANSD DFGCSSQVVP F

Arabidopsis Description

PUB25U-box domain-containing protein 25 [Source:UniProtKB/Swiss-Prot;Acc:Q9LT79]
SUBAcon: [golgi,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.