Factsheet for Os02t0548700-00

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular, cytosol

Predictor Summary:

plastid 3
cytosol 1
nucleus 1
mitochondrion 1
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES06938	Sorghum	extracellular	85.61	87.72
Zm00001d050712_P001	Maize	extracellular, plastid	84.17	85.82
TraesCS6A01G256700.1	Wheat	extracellular	83.21	85.26
TraesCS6D01G237900.1	Wheat	extracellular	82.97	85.01
TraesCS6B01G268300.1	Wheat	extracellular	82.97	85.01
Zm00001d016764_P001	Maize	extracellular	83.69	83.49
GSMUA_Achr9P08750_001	Banana	cytosol, plasma membrane, plastid	57.79	69.86
GSMUA_Achr1P13220_001	Banana	cytosol	62.59	65.91
GSMUA_Achr6P25670_001	Banana	cytosol	62.59	60.98
PGSC0003DMT400066588	Potato	cytosol	53.24	53.49
VIT_03s0063g00180.t01	Wine grape	cytosol	53.24	53.49
Solyc01g107980.2.1	Tomato	cytosol	52.52	52.77
KRH50316	Soybean	cytosol, plasma membrane, plastid	51.8	52.17
KRH70657	Soybean	cytosol	51.32	51.57
CDX99233	Canola	cytosol, peroxisome, plastid	51.56	51.07
CDY50158	Canola	cytosol	50.6	50.6
Bra038205.1-P	Field mustard	cytosol	50.6	50.6
CDX95458	Canola	cytosol	50.36	50.36
Bra022417.1-P	Field mustard	cytosol	50.6	50.0
Bra022415.1-P	Field mustard	cytosol	50.6	50.0
CDX92328	Canola	cytosol	50.6	49.88
AT3G19380.1	Thale cress	cytosol, golgi, plastid	50.36	49.88
Bra014206.1-P	Field mustard	cytosol	50.36	49.65
CDY16513	Canola	cytosol	50.36	49.65
CDY59286	Canola	cytosol	50.12	49.41
AT1G49780.1	Thale cress	cytoskeleton, cytosol, vacuole	48.44	47.98
Os04t0686000-01	Rice	cytosol	30.7	30.99
Os01t0865700-00	Rice	plastid	29.98	30.71
Os04t0437300-01	Rice	cytosol	30.94	30.28
Os06t0248500-00	Rice	mitochondrion	32.37	29.8
Os03t0240600-01	Rice	plastid	31.41	29.44
Os02t0738200-01	Rice	mitochondrion	30.46	27.85
Os02t0539200-01	Rice	cytosol	29.5	27.83
Os04t0418500-01	Rice	plastid	28.54	26.39
Os02t0690600-01	Rice	cytosol	26.62	26.12
Os05t0439400-01	Rice	plasma membrane	26.38	24.34
Os04t0589700-01	Rice	cytosol	24.46	24.23
Os02t0540700-00	Rice	plastid	29.26	24.16
Os12t0161100-00	Rice	cytosol	24.94	23.69
Os03t0232600-01	Rice	cytosol	25.42	23.09

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	EntrezGene:4329616	InterPro:ARM-like	ProteinID:BAF08999.2
ProteinID:BAS79143.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR003613
InterPro:IPR011989	InterPro:IPR013083	EnsemblPlantsGene:Os02g0548700	EnsemblPlants:Os02t0548700-00	PFAM:PF04564	PFscan:PS51698
PANTHER:PTHR22849	PANTHER:PTHR22849:SF56	UniProt:Q0E0I9	SMART:SM00504	SUPFAM:SSF57850	UniParc:UPI0001B670D4
InterPro:Ubox_domain	RefSeq:XP_015623684.1	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

plant U-box-containing protein 43, U-box protein 43Similar to ubiquitin-protein ligase. (Os02t0548700-00)

Coordinates

chr2:-:20588289..20589687

Molecular Weight (calculated)

43284.4 Da

IEP (calculated)

7.701

GRAVY (calculated)

0.141

Length

417 amino acids

Sequence
(BLAST)

001: MPGSVPLALG LDTAGVQVPW YFRCPISLEL MRDPVTVSTG QTYDRASIES WVATGNTTCP VTRSPLDRAF TLIPNHTLRR LIQDWCVAHR SLGVERIPTP
101: KQPADPDLIR SLLAQCPALP PLRKLRALAR DSDKNRLVMA THETRAALVD MAFGTNAGGE EVEAEAMAVL AMVGLGEAEA VEVVGRRERV ARLGELLVSG
201: EGAATTTATL ECRVNAGAVV EAVAAVSGAD ARAVLGAAEG VMEGLVALVE EKAHARAVRV GIRGLFALCL AKENRPRAVA AGAAAALARR VAEGGGGAGE
301: PERALAAVER LCRTEGGRDA VVAGAGGGAA AVCALVRAMS GRSAEHAAGA LVAVVGGSEP LQVEAVRAGA MSQLLLMVQG GCSERAKRKA QHLLKLLRSA
401: WPAADSIANS DDFLQPY

Best Arabidopsis Sequence Match ( AT3G19380.1 )
(BLAST)

001: MPRNIEPLDL GIQIPYHFRC PISLELMQDP VTVCTGQTYD RASIESWVSI GNNTTCPVTR APLSDFTLIP NHTLRRLIQE WCVANRSNGV ERIPTPKQPA
101: DPTSVRALLS QASAITGTHV SVRSRAAALR RLRGFARDSD KNRVLIAAHN ATEILIKILF SETTSSELVS ESLALLVMLP ITEPNQFVSI SSDPGRVEFL
201: TRLLFDSSIE TRVNAAALIE IVSTGTKSAD LKGSISNSES VFEGVLDLLR NPISSRRALK IGIKTLFALC SVKSTRHIAI TAGAPEILID RLAADFDRCD
301: TERALATVEL LCRTPEGCAA FGEHALTVPL LVKTILRVSD RATEYAAGAL LALCTAEERW REEAAGAGVV VQLLLMVQSE CTERAKKKAQ KLLKLLRDSW
401: PDYNSFANSD DFGCSSQVVP F

Arabidopsis Description

PUB25U-box domain-containing protein 25 [Source:UniProtKB/Swiss-Prot;Acc:Q9LT79]
SUBAcon: [golgi,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.