Factsheet for Os06t0248500-00

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
mitochondrion 6
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G105600.1	Wheat	mitochondrion	77.7	78.92
Zm00001d044734_P001	Maize	mitochondrion	76.82	78.73
TraesCS7D01G201600.1	Wheat	mitochondrion	76.38	78.28
KXG19704	Sorghum	mitochondrion	77.48	76.47
HORVU7Hr1G040790.2	Barley	plastid	78.37	72.75
Os02t0738200-01	Rice	mitochondrion	66.89	66.45
TraesCS5A01G088600.1	Wheat	cytosol	43.27	57.31
GSMUA_Achr6P11310_001	Banana	cytosol	45.25	53.95
GSMUA_Achr6P02470_001	Banana	mitochondrion	45.03	53.68
GSMUA_Achr7P18640_001	Banana	mitochondrion	43.27	51.72
Os03t0240600-01	Rice	plastid	50.55	51.46
GSMUA_Achr11P...	Banana	mitochondrion	47.24	50.35
GSMUA_Achr10P...	Banana	cytosol	41.72	50.27
GSMUA_Achr3P02030_001	Banana	plastid	42.6	46.06
VIT_01s0011g06140.t01	Wine grape	mitochondrion	44.81	45.93
KRH48691	Soybean	cytosol	42.16	43.71
KRH39018	Soybean	mitochondrion	41.94	43.38
KRH17309	Soybean	cytosol, mitochondrion	41.94	43.28
KRH72959	Soybean	cytosol, mitochondrion	41.5	42.92
KRG97963	Soybean	mitochondrion	39.96	42.0
KRH30918	Soybean	mitochondrion	40.18	41.84
PGSC0003DMT400058621	Potato	cytosol, mitochondrion	41.06	41.24
Solyc01g005160.2.1	Tomato	mitochondrion	40.84	41.11
Solyc04g008100.1.1	Tomato	cytosol	38.63	39.59
PGSC0003DMT400075778	Potato	mitochondrion	38.63	39.59
AT5G37490.1	Thale cress	cytosol, nucleus, peroxisome	36.42	37.93
PGSC0003DMT400073836	Potato	cytosol	34.22	36.99
Bra025442.1-P	Field mustard	mitochondrion	35.54	36.76
CDY27655	Canola	mitochondrion	35.32	36.53
CDY16432	Canola	cytosol	34.44	36.45
CDX99694	Canola	mitochondrion	35.1	36.3
Solyc11g006030.1.1	Tomato	cytosol	34.44	36.28
Bra039752.1-P	Field mustard	cytosol	33.55	36.02
CDY50319	Canola	cytosol	33.55	35.6
AT1G66160.1	Thale cress	cytosol	33.77	35.5
AT3G02840.1	Thale cress	mitochondrion	29.14	34.83
CDX92016	Canola	mitochondrion	28.26	34.78
Bra001067.1-P	Field mustard	mitochondrion	28.04	34.51
CDX74232	Canola	cytosol, extracellular, mitochondrion, plastid	28.04	34.51
Os01t0865700-00	Rice	plastid	29.8	33.17
Bra040605.1-P	Field mustard	mitochondrion	27.37	33.07
CDY28714	Canola	mitochondrion	27.37	33.07
Os02t0548700-00	Rice	cytosol, extracellular, plastid	29.8	32.37
CDY51529	Canola	mitochondrion	26.71	32.27
Os04t0686000-01	Rice	cytosol	29.36	32.2
Os02t0539200-01	Rice	cytosol	30.91	31.67
Os04t0418500-01	Rice	plastid	26.27	26.39
Os03t0232600-01	Rice	cytosol	26.49	26.14
Os02t0540700-00	Rice	plastid	28.92	25.94
Os04t0437300-01	Rice	cytosol	24.28	25.82
Os02t0690600-01	Rice	cytosol	24.06	25.65
Os12t0161100-00	Rice	cytosol	23.84	24.6
Os04t0589700-01	Rice	cytosol	22.74	24.47
Os05t0439400-01	Rice	plasma membrane	22.52	22.57

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	EntrezGene:4340648	UniProt:A0A0P0WV49	InterPro:ARM-like
InterPro:ARM-type_fold	ProteinID:BAS97044.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	EnsemblPlantsGene:Os06g0248500	EnsemblPlants:Os06t0248500-00
PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF16	SMART:SM00504	SUPFAM:SSF48371
SUPFAM:SSF57850	UniParc:UPI0001C7C181	InterPro:Ubox_domain	RefSeq:XP_015643734.1	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

plant U-box-containing protein 39, U-box protein 39U box domain containing protein. (Os06t0248500-00)

Coordinates

chr6:+:7709145..7710744

Molecular Weight (calculated)

47133.0 Da

IEP (calculated)

7.803

GRAVY (calculated)

0.199

Length

453 amino acids

Sequence
(BLAST)

001: MVLPMSRATR VAGRLMPEIS LLRRGRKSAA RGGDDAEVEV SVPANFVCPI SLEMMRDPVT APTGITYDRE SVEGWLARGH DTCPVTGRPV RLADLVPNHA
101: TRRMIQDWCV ANRARGVERV PTPRVPVGED DAEEVVAGVS AAARRGDAAA CGAAAATARA LGRESERNRR CLAGAGAAHA LSSAFGLLAG EEPVVEGAVA
201: GALGEILAAL TVFFPLDEEC RSCIASPPSL KSLASLLSHG GELAARVSAA VVLRELASSG DRHALEAIAR AHGMCDALVG LVTSPVSSQA TKAALVTAYY
301: LVSSGDRAAA RFAELGVVPA AVELLVDADK GTSEKALAVL DAALCADAGV ESARAHALTV PVLVKKMFRV SDMATDFAVS ALWRLCRAGA GAAPCRAEAL
401: RVGAFQKLLL LLQVGCAGVT KERASELLKM LNGSRGSVEC IETVDFKGLK RPF

Best Arabidopsis Sequence Match ( AT5G37490.1 )
(BLAST)

001: MGFLWRTRSN EKKITPVLSW PESEPESEIT IPPEFQCPIS IDLMKDPVII STGITYDRVS IETWINSGNK TCPVTNTVLT TFDQIPNHTI RKMIQGWCVE
101: KGSPLIQRIP TPRVPLMPCE VYEISRKLSS ATRRGDYEKC GVIIEKIKKL GDESEKNRKC VNENSVGWVL CDCFDKFSGD EKLTFMLNEI LSLLTWMFPI
201: GLEGISKLAS ATSFRCVAGL LKSTDDSVRQ NAAFIMKEIL SLDETRVHSF AVENGVAEAL VKLIRDSVSS SSTKSSLIAI YQMVLQKPEI ASEFLEIGLV
301: SITVEMIVDA ENSVCEKALA VLDAICETEH GREEVRKNAL VMPLLVKKIA KVSELATRSS MSMILKLWKT GNTVAVEDAV RLGAFQKVLL VLQVGYGEET
401: KEKATELLKM MNTQMKLMSD CVDSLKEFKY IKKPF

Arabidopsis Description

PUB21U-box domain-containing protein 21 [Source:UniProtKB/Swiss-Prot;Acc:Q5PNY6]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.