Factsheet for VIT_01s0011g06140.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400075778	Potato	mitochondrion	60.41	60.41
Solyc04g008100.1.1	Tomato	cytosol	59.5	59.5
PGSC0003DMT400058621	Potato	cytosol, mitochondrion	60.41	59.2
Solyc01g005160.2.1	Tomato	mitochondrion	58.6	57.56
GSMUA_Achr6P11310_001	Banana	cytosol	48.87	56.84
GSMUA_Achr11P...	Banana	mitochondrion	52.71	54.82
GSMUA_Achr10P...	Banana	cytosol	45.7	53.72
GSMUA_Achr6P02470_001	Banana	mitochondrion	45.48	52.89
GSMUA_Achr7P18640_001	Banana	mitochondrion	45.25	52.77
GSMUA_Achr3P02030_001	Banana	plastid	46.15	48.69
TraesCS4D01G229900.1	Wheat	mitochondrion	48.19	48.41
TraesCS4B01G228700.1	Wheat	mitochondrion	48.19	48.41
HORVU4Hr1G064070.1	Barley	mitochondrion	48.19	48.41
Os03t0240600-01	Rice	plastid	48.42	48.09
TraesCS7B01G105600.1	Wheat	mitochondrion	47.29	46.86
TraesCS7D01G201600.1	Wheat	mitochondrion	46.83	46.83
TraesCS6A01G312600.1	Wheat	mitochondrion	47.51	46.15
TraesCS6B01G342800.1	Wheat	mitochondrion	47.29	46.04
EER92576	Sorghum	mitochondrion	47.29	46.04
Zm00001d017976_P001	Maize	mitochondrion	47.06	46.02
Zm00001d028374_P001	Maize	mitochondrion	46.15	45.64
Os02t0738200-01	Rice	mitochondrion	46.61	45.18
TraesCS6D01G292200.1	Wheat	mitochondrion	46.38	45.15
Os06t0248500-00	Rice	mitochondrion	45.93	44.81
EES05563	Sorghum	mitochondrion	46.83	44.81
Zm00001d044734_P001	Maize	mitochondrion	44.57	44.57
KXG19704	Sorghum	mitochondrion	45.7	44.01
HORVU7Hr1G040790.2	Barley	plastid	46.83	42.42
HORVU6Hr1G077120.1	Barley	plastid	47.74	41.21
Zm00001d030251_P001	Maize	cytosol	38.46	38.29
VIT_08s0105g00190.t01	Wine grape	cytosol, plastid, vacuole	34.84	37.47
VIT_08s0105g00180.t01	Wine grape	cytosol, plastid, vacuole	34.62	37.23
TraesCS5A01G088600.1	Wheat	cytosol	28.51	36.84
VIT_06s0009g00320.t01	Wine grape	cytosol	32.58	34.78
VIT_03s0063g00180.t01	Wine grape	cytosol	32.35	34.46
KXG38738	Sorghum	plastid	38.01	34.01
VIT_06s0009g00370.t01	Wine grape	cytosol	29.64	32.35
VIT_08s0105g00200.t01	Wine grape	cytosol	27.15	29.56
VIT_04s0044g00870.t01	Wine grape	cytosol	26.7	28.64
VIT_04s0044g01460.t01	Wine grape	cytosol	25.79	28.57
VIT_18s0166g00190.t01	Wine grape	plasma membrane	23.98	26.5
VIT_00s0471g00010.t01	Wine grape	cytosol	24.21	23.94
VIT_18s0001g08790.t01	Wine grape	cytosol	24.21	23.67

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100852659	wikigene:100852659	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like
InterPro:ARM-type_fold	ProteinID:CCB50764	ProteinID:CCB50764.1	UniProt:F6HFB5	EMBL:FN595752	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR003613	InterPro:IPR011989
InterPro:IPR013083	EntrezGene:LOC100852659	wikigene:LOC100852659	PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR22849
PANTHER:PTHR22849:SF102	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI00015C8C78	InterPro:Ubox_domain
ArrayExpress:VIT_01s0011g06140	EnsemblPlantsGene:VIT_01s0011g06140	EnsemblPlants:VIT_01s0011g06140.t01	RefSeq:XP_003631249	RefSeq:XP_003631249.1	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:F6HFB5]

Coordinates

chr1:-:5940567..5942189

Molecular Weight (calculated)

49347.1 Da

IEP (calculated)

8.001

GRAVY (calculated)

-0.139

Length

442 amino acids

Sequence
(BLAST)

001: MISSWRRRRA GRRAAKLQQH AEDDIGSMEL TTPNHFRCPI SLDLMKDPVT LSTGITYDRE SIEMWIEAGN RTCPITNQVL RSLEPIPNHT IRKMIQDWCV
101: ENRSFGIERI PTPRIPLSSV EVTDMLSKFK MAYRREDEAG CRELVAKMKS KGKESERNKR CIVINGAAGV LSAAFEAFSS ASFDKYVAVL EDILAALTWM
201: SPLDGEAKSY LSSAASLNCL VWLLKSGDLS ARGNAVSTLK ELLSSDKRKV YALSEIEGAK EALVKLVKEP ICPTATKTSL VVIFHMVSSS PSNEDTKVRF
301: VEMGLVELLL ELLVDSEKSV CEKALGVLDG ICGCEEGREK AYGHALTMPV LVKKLLRVSD LATEFSVSIL WKLSKNEKRE DGSVLVEALQ VGAFQKLLLL
401: LQVGCSDRTK EKATELLKLL NIHRERLECI DSMDFKDLKR PF

Best Arabidopsis Sequence Match ( AT5G37490.1 )
(BLAST)

001: MGFLWRTRSN EKKITPVLSW PESEPESEIT IPPEFQCPIS IDLMKDPVII STGITYDRVS IETWINSGNK TCPVTNTVLT TFDQIPNHTI RKMIQGWCVE
101: KGSPLIQRIP TPRVPLMPCE VYEISRKLSS ATRRGDYEKC GVIIEKIKKL GDESEKNRKC VNENSVGWVL CDCFDKFSGD EKLTFMLNEI LSLLTWMFPI
201: GLEGISKLAS ATSFRCVAGL LKSTDDSVRQ NAAFIMKEIL SLDETRVHSF AVENGVAEAL VKLIRDSVSS SSTKSSLIAI YQMVLQKPEI ASEFLEIGLV
301: SITVEMIVDA ENSVCEKALA VLDAICETEH GREEVRKNAL VMPLLVKKIA KVSELATRSS MSMILKLWKT GNTVAVEDAV RLGAFQKVLL VLQVGYGEET
401: KEKATELLKM MNTQMKLMSD CVDSLKEFKY IKKPF

Arabidopsis Description

PUB21U-box domain-containing protein 21 [Source:UniProtKB/Swiss-Prot;Acc:Q5PNY6]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.