Factsheet for VIT_06s0009g00370.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH22634	Soybean	cytosol	60.99	58.53
KRG88869	Soybean	cytosol	60.0	58.27
KRH26690	Soybean	cytosol	61.23	58.08
KRH25323	Soybean	cytosol	57.78	57.92
PGSC0003DMT400038196	Potato	cytosol	59.26	57.42
VIT_08s0105g00200.t01	Wine grape	cytosol	57.04	56.9
Solyc01g009320.1.1	Tomato	cytosol	57.53	55.74
Solyc06g074140.1.1	Tomato	cytosol	55.56	53.57
Solyc11g068940.1.1	Tomato	cytosol	54.81	52.48
PGSC0003DMT400015179	Potato	cytosol	51.85	52.11
GSMUA_Achr11P...	Banana	cytosol	45.43	50.27
VIT_08s0105g00190.t01	Wine grape	cytosol, plastid, vacuole	47.9	47.2
VIT_08s0105g00180.t01	Wine grape	cytosol, plastid, vacuole	47.65	46.96
VIT_06s0009g00320.t01	Wine grape	cytosol	46.91	45.89
VIT_01s0011g06140.t01	Wine grape	mitochondrion	32.35	29.64
VIT_03s0063g00180.t01	Wine grape	cytosol	28.89	28.19
VIT_04s0044g00870.t01	Wine grape	cytosol	24.94	24.51
VIT_04s0044g01460.t01	Wine grape	cytosol	23.95	24.31
VIT_18s0166g00190.t01	Wine grape	plasma membrane	21.98	22.25
VIT_18s0001g08790.t01	Wine grape	cytosol	23.46	21.02
VIT_00s0471g00010.t01	Wine grape	cytosol	22.96	20.81

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100261566	wikigene:100261566	Gene3D:3.30.40.10	MapMan:35.1	EMBL:AM429550
InterPro:ARM-like	InterPro:ARM-type_fold	ProteinID:CAN80214	ProteinID:CAN80214.1	ProteinID:CCB49206	ProteinID:CCB49206.1
UniProt:F6HAE4	EMBL:FN595504	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	EntrezGene:LOC100261566	wikigene:LOC100261566
PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF104	SMART:SM00504	SUPFAM:SSF48371
SUPFAM:SSF57850	TIGR:TC62472	UniParc:UPI0002107EE4	InterPro:Ubox_domain	ArrayExpress:VIT_06s0009g00370	EnsemblPlantsGene:VIT_06s0009g00370
EnsemblPlants:VIT_06s0009g00370.t01	unigene:Vvi.23865	RefSeq:XP_002275220	RefSeq:XP_002275220.2	InterPro:Znf_RING/FYVE/PHD	:

Description

RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:F6HAE4]

Coordinates

chr6:+:10751093..10752550

Molecular Weight (calculated)

46032.8 Da

IEP (calculated)

8.474

GRAVY (calculated)

0.004

Length

405 amino acids

Sequence
(BLAST)

001: MDDIEIPQYF LCPISLQIMK DPVTAMTGIT YDRESIEQWL LTAKDTTCPV TKQPLERDFV LTPNHTLRRL IQAWCADNAT NGVDRIPTPK TPLDRTHVVK
101: LIRDLGVAQL YLKTLQKMEA LTRDNERNRN CMADAGAAKA IVLLIIKCFK ENKTTGVEEG LRILHLIWSP TSEMKLLLKE NYDFVDAVTW ALGCETDNYV
201: AVRSNAVLVL KNIVEVASPN LLERLKFEFL NRLIRTMREK ISQAAMKAAL YVLMEVCPWG RNKWQMIEAG AVFQLIEMEL ENPEKKITEI IFCLLGHLCS
301: CADGRAQFLA HAGSMAMLSK RILRVSNTTD DRALHIIALI SKFSGTNEVL MEMLRVGAVS KLCMVLQADC AKYLKEKARE ILRLHSKVWN NSPCIAVYLL
401: TRYAR

Best Arabidopsis Sequence Match ( AT3G11840.1 )
(BLAST)

001: MDQEEEEIEI PNYFICPISL EIMKDPVTTV SGITYDRQNI VKWLEKVPSC PVTKQPLPLD SDLTPNHMLR RLIQHWCVEN ETRGVVRIST PRVPPGKLNV
101: VEEIKNLKKF GQEALGREET LQKLEVLAMD GNNRRLMCEC GVHKSLILFV VKCTSEDEDG RRRIKGLDES LRLLHLIGIP SNDAKTILME NDRVMESLTW
201: VLHQEDFLSK AYTIVLLRNL TEYTSSHIVE RLNPEIFKGI IGFLKDVVNS VNRTSPTVRE TVQSSSRPSL GKTEPSKLDH SLVIKQAVTA ALMILLETSS
301: WSRNRSLLVD LGAVSELIEL EISYTGEKRI TELMLGVLSR LCCCANGRAE ILAHRGGIAV VTKRLLRVSP AADDRAISIL TTVSKFSPEN MVVEEMVNVG
401: TVEKLCSVLG MDCGLNLKEK AKEILKDHFD EWKKFPCIDI TLLTKLLSIS PKGPKI

Arabidopsis Description

PUB24E3 ubiquitin-protein ligase PUB24 [Source:UniProtKB/Swiss-Prot;Acc:Q9SF15]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.