Factsheet for Solyc06g074140.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400015179	Potato	cytosol	91.43	95.29
Solyc01g009320.1.1	Tomato	cytosol	67.62	67.94
Solyc11g068940.1.1	Tomato	cytosol	62.38	61.94
VIT_06s0009g00370.t01	Wine grape	cytosol	53.57	55.56
KRH25323	Soybean	cytosol	48.1	50.0
KRG88869	Soybean	cytosol	49.29	49.64
KRH22634	Soybean	cytosol	49.05	48.82
KRH26690	Soybean	cytosol	49.29	48.48
GSMUA_Achr11P...	Banana	cytosol	40.24	46.17
Solyc01g007030.2.1	Tomato	cytosol	22.86	45.5
Solyc01g007050.1.1	Tomato	cytosol	43.81	43.71
Solyc01g009330.1.1	Tomato	cytosol	43.1	42.49
Solyc01g007000.2.1	Tomato	cytosol, nucleus, vacuole	41.19	42.3
Solyc11g068920.1.1	Tomato	cytosol	40.48	42.08
Solyc01g007020.2.1	Tomato	cytosol	40.71	41.91
Solyc01g007010.2.1	Tomato	cytosol	40.24	41.42
Solyc01g007040.2.1	Tomato	cytosol, nucleus, vacuole	15.95	37.43
Solyc01g080920.2.1	Tomato	cytosol	27.38	28.12
Solyc04g008100.1.1	Tomato	cytosol	28.57	27.15
Solyc11g006030.1.1	Tomato	cytosol	26.43	25.81
Solyc01g005160.2.1	Tomato	mitochondrion	26.67	24.89
Solyc01g107980.2.1	Tomato	cytosol	24.29	24.58
Solyc11g005700.1.1	Tomato	cytosol	21.9	21.9
Solyc05g056500.1.1	Tomato	cytosol	20.24	21.2
Solyc04g077610.2.1	Tomato	cytosol	20.24	20.29
Solyc04g071030.1.1	Tomato	cytosol	19.76	19.44

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR003613	InterPro:IPR011989
InterPro:IPR013083	UniProt:K4C9D2	PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF104
SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	EnsemblPlantsGene:Solyc06g074140.1	EnsemblPlants:Solyc06g074140.1.1	UniParc:UPI00027663B4
InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:K4C9D2]

Coordinates

chr6:+:45857406..45858668

Molecular Weight (calculated)

47718.0 Da

IEP (calculated)

8.726

GRAVY (calculated)

0.003

Length

420 amino acids

Sequence
(BLAST)

001: MEEVEIPKYF LCPISLQIMK DPVTTVTGIT YDRENIETWL LMAEEKTSTC PVTKQILPRD TALLTPNHML GKFIRSWTIC NAEKGIEQIP SPKYPLNKSH
101: VIRLIRQVKN RDLYLEALRK MVTMISENEE NRKCLDEGGV IKAMVLFILR SFKEGELVMG IEEALRIFHF VWRPTHENKQ LVKENHDLIE AILWILKSRE
201: VCYDNNQVVT SIKTHAMLVL KNVISVSSTN VLSSLTPEFF QQMLNSLRKN NVKYICQQAT KAALHVLIDT CPGGRNRLKM IELGAVFELI ELELSNNEKR
301: VSELVFSLLS HLCSLADGRA ELLKHAAGIA IVSKKILRIS PATDESAIQI IGLIAKFSAT KEVLMEMLRV GGVTKLCMVI QANCEASLRK KALEILRAHN
401: NVWSNSPCVQ IYFLTRYPGQ

Best Arabidopsis Sequence Match ( AT3G11840.1 )
(BLAST)

001: MDQEEEEIEI PNYFICPISL EIMKDPVTTV SGITYDRQNI VKWLEKVPSC PVTKQPLPLD SDLTPNHMLR RLIQHWCVEN ETRGVVRIST PRVPPGKLNV
101: VEEIKNLKKF GQEALGREET LQKLEVLAMD GNNRRLMCEC GVHKSLILFV VKCTSEDEDG RRRIKGLDES LRLLHLIGIP SNDAKTILME NDRVMESLTW
201: VLHQEDFLSK AYTIVLLRNL TEYTSSHIVE RLNPEIFKGI IGFLKDVVNS VNRTSPTVRE TVQSSSRPSL GKTEPSKLDH SLVIKQAVTA ALMILLETSS
301: WSRNRSLLVD LGAVSELIEL EISYTGEKRI TELMLGVLSR LCCCANGRAE ILAHRGGIAV VTKRLLRVSP AADDRAISIL TTVSKFSPEN MVVEEMVNVG
401: TVEKLCSVLG MDCGLNLKEK AKEILKDHFD EWKKFPCIDI TLLTKLLSIS PKGPKI

Arabidopsis Description

PUB24E3 ubiquitin-protein ligase PUB24 [Source:UniProtKB/Swiss-Prot;Acc:Q9SF15]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.