Factsheet for Solyc11g006030.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
mitochondrion 3
cytosol 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400073836	Potato	cytosol	92.79	95.23
KRH30918	Soybean	mitochondrion	47.44	46.9
Solyc01g005160.2.1	Tomato	mitochondrion	49.07	46.89
KRG97963	Soybean	mitochondrion	46.74	46.64
Solyc04g008100.1.1	Tomato	cytosol	47.21	45.93
AT5G37490.1	Thale cress	cytosol, nucleus, peroxisome	46.05	45.52
Bra039752.1-P	Field mustard	cytosol	44.65	45.5
KRH17309	Soybean	cytosol, mitochondrion	46.05	45.1
CDY16432	Canola	cytosol	44.88	45.09
CDY50319	Canola	cytosol	44.42	44.73
KRH72959	Soybean	cytosol, mitochondrion	44.88	44.06
GSMUA_Achr10P...	Banana	cytosol	38.37	43.88
AT1G66160.1	Thale cress	cytosol	43.26	43.16
CDX99694	Canola	mitochondrion	43.72	42.92
Bra025442.1-P	Field mustard	mitochondrion	43.72	42.92
CDY27655	Canola	mitochondrion	43.49	42.69
GSMUA_Achr6P11310_001	Banana	cytosol	37.67	42.63
GSMUA_Achr11P...	Banana	mitochondrion	41.63	42.12
GSMUA_Achr6P02470_001	Banana	mitochondrion	34.88	39.47
GSMUA_Achr7P18640_001	Banana	mitochondrion	34.42	39.05
TraesCS4B01G228700.1	Wheat	mitochondrion	39.77	38.86
TraesCS4D01G229900.1	Wheat	mitochondrion	39.3	38.41
HORVU4Hr1G064070.1	Barley	mitochondrion	39.3	38.41
Os03t0240600-01	Rice	plastid	39.53	38.2
Zm00001d028374_P001	Maize	mitochondrion	39.53	38.03
Solyc01g007040.2.1	Tomato	cytosol, nucleus, vacuole	15.58	37.43
EER92576	Sorghum	mitochondrion	39.3	37.22
TraesCS7B01G105600.1	Wheat	mitochondrion	38.6	37.22
TraesCS7D01G201600.1	Wheat	mitochondrion	38.14	37.1
CDY51529	Canola	mitochondrion	32.09	36.8
Zm00001d017976_P001	Maize	mitochondrion	38.6	36.73
TraesCS6B01G342800.1	Wheat	mitochondrion	38.6	36.56
Bra040605.1-P	Field mustard	mitochondrion	31.86	36.53
CDX92016	Canola	mitochondrion	31.16	36.41
TraesCS6A01G312600.1	Wheat	mitochondrion	38.14	36.04
GSMUA_Achr3P02030_001	Banana	plastid	35.12	36.04
TraesCS6D01G292200.1	Wheat	mitochondrion	37.91	35.9
AT3G02840.1	Thale cress	mitochondrion	31.63	35.88
CDX74232	Canola	cytosol, extracellular, mitochondrion, plastid	30.7	35.87
Zm00001d044734_P001	Maize	mitochondrion	36.74	35.75
CDY28714	Canola	mitochondrion	31.16	35.73
Bra001067.1-P	Field mustard	mitochondrion	30.47	35.6
Os02t0738200-01	Rice	mitochondrion	37.67	35.53
EES05563	Sorghum	mitochondrion	38.14	35.5
KXG19704	Sorghum	mitochondrion	37.67	35.29
Os06t0248500-00	Rice	mitochondrion	36.28	34.44
HORVU7Hr1G040790.2	Barley	plastid	38.14	33.61
Solyc01g007000.2.1	Tomato	cytosol, nucleus, vacuole	31.63	33.25
Solyc01g007010.2.1	Tomato	cytosol	31.16	32.84
Solyc01g007020.2.1	Tomato	cytosol	30.7	32.35
HORVU6Hr1G077120.1	Barley	plastid	37.91	31.84
Solyc01g007030.2.1	Tomato	cytosol	15.58	31.75
TraesCS5A01G088600.1	Wheat	cytosol	24.42	30.7
Solyc11g068920.1.1	Tomato	cytosol	28.6	30.45
Zm00001d030251_P001	Maize	cytosol	31.16	30.18
Solyc01g009330.1.1	Tomato	cytosol	28.84	29.11
Solyc01g107980.2.1	Tomato	cytosol	27.21	28.19
KXG38738	Sorghum	plastid	30.93	26.92
Solyc01g009320.1.1	Tomato	cytosol	25.81	26.55
Solyc06g074140.1.1	Tomato	cytosol	25.81	26.43
Solyc11g068940.1.1	Tomato	cytosol	24.65	25.06
Solyc01g080920.2.1	Tomato	cytosol	23.49	24.69
Solyc01g007050.1.1	Tomato	cytosol	23.02	23.52
Solyc11g005700.1.1	Tomato	cytosol	21.86	22.38
Solyc05g056500.1.1	Tomato	cytosol	20.23	21.7
Solyc04g077610.2.1	Tomato	cytosol	20.93	21.48
Solyc04g071030.1.1	Tomato	cytosol	20.47	20.61

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR003613	InterPro:IPR011989
InterPro:IPR013083	UniProt:K4D4L6	PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF61
SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	EnsemblPlantsGene:Solyc11g006030.1	EnsemblPlants:Solyc11g006030.1.1	UniParc:UPI0002769C26
InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:K4D4L6]

Coordinates

chr11:-:840424..841716

Molecular Weight (calculated)

48924.3 Da

IEP (calculated)

8.189

GRAVY (calculated)

-0.026

Length

430 amino acids

Sequence
(BLAST)

001: MIFSWIRKKK VTKLNSCKEL TIPSHFLCPI SLDLMKDPVT LCTGISYDRE NIEKWIEARN STCPVTNQHL RNFNLIPNHA IRKTIQDWCV ENKNYGIERV
101: PTPRIPIDSS QVTEICSRLM IEARRGNEMK CRELVGRVRI LAKESDRNKK CIVECGVGYV FATCFEIFSM GIQDELLKDL LSAMTWMFPI GQEGISKLVS
201: STSLRCMARF MKGEDLSARQ NVVIVMKELL YYDQSCTNVL IDIEDLVESL YQMVKVPICP STTKASLTVI YSIISYTSSE NNKKIVSKFV NMGIVCLVVE
301: MLVDCEKSII EKGLAILDII CNFEEGKQKA YEHGLTMAII AKKIMRVTEM ATECSTSILW KLCKSGNNEN NSVIEALELG VFQKLLVVLQ VGCGEKTKEK
401: ATELLKLMNL YKDRVDCFDG STFKYLKKSY

Best Arabidopsis Sequence Match ( AT5G37490.1 )
(BLAST)

001: MGFLWRTRSN EKKITPVLSW PESEPESEIT IPPEFQCPIS IDLMKDPVII STGITYDRVS IETWINSGNK TCPVTNTVLT TFDQIPNHTI RKMIQGWCVE
101: KGSPLIQRIP TPRVPLMPCE VYEISRKLSS ATRRGDYEKC GVIIEKIKKL GDESEKNRKC VNENSVGWVL CDCFDKFSGD EKLTFMLNEI LSLLTWMFPI
201: GLEGISKLAS ATSFRCVAGL LKSTDDSVRQ NAAFIMKEIL SLDETRVHSF AVENGVAEAL VKLIRDSVSS SSTKSSLIAI YQMVLQKPEI ASEFLEIGLV
301: SITVEMIVDA ENSVCEKALA VLDAICETEH GREEVRKNAL VMPLLVKKIA KVSELATRSS MSMILKLWKT GNTVAVEDAV RLGAFQKVLL VLQVGYGEET
401: KEKATELLKM MNTQMKLMSD CVDSLKEFKY IKKPF

Arabidopsis Description

PUB21U-box domain-containing protein 21 [Source:UniProtKB/Swiss-Prot;Acc:Q5PNY6]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.