Factsheet for Solyc04g071030.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
nucleus 1
mitochondrion 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400002079	Potato	cytosol	91.8	93.78
VIT_18s0166g00190.t01	Wine grape	plasma membrane	47.07	50.25
GSMUA_Achr8P30420_001	Banana	mitochondrion	27.87	43.59
KRH08734	Soybean	mitochondrion	41.92	43.24
KRH70331	Soybean	mitochondrion	40.05	42.01
Solyc11g005700.1.1	Tomato	cytosol	39.34	40.0
OQU81548	Sorghum	mitochondrion	37.47	35.79
GSMUA_Achr10P...	Banana	plastid	32.08	35.68
Zm00001d016719_P001	Maize	cytosol	35.83	35.66
Zm00001d050689_P001	Maize	cytosol	35.6	35.43
TraesCS2D01G296700.1	Wheat	cytosol, mitochondrion, plastid	36.53	35.37
TraesCS2B01G315100.1	Wheat	cytosol	36.3	35.15
TraesCS2A01G298600.1	Wheat	cytosol, mitochondrion, plastid	36.3	35.15
Zm00001d025379_P001	Maize	cytosol, mitochondrion, peroxisome, plastid	36.3	34.91
Os04t0418500-01	Rice	plastid	36.77	34.81
EES05205	Sorghum	cytosol	36.07	34.0
GSMUA_Achr6P18140_001	Banana	cytosol	31.62	33.01
GSMUA_Achr5P01020_001	Banana	cytosol	30.91	32.92
Os02t0540700-00	Rice	plastid	36.3	30.69
HORVU2Hr1G074130.1	Barley	plastid	36.3	29.92
Os05t0439400-01	Rice	plasma membrane	29.98	28.32
Zm00001d038280_P001	Maize	cytosol	29.04	27.43
HORVU1Hr1G074180.1	Barley	mitochondrion, plastid	29.04	27.37
KXG22102	Sorghum	mitochondrion	29.27	27.35
TraesCS1D01G274600.1	Wheat	mitochondrion	28.57	26.93
TraesCS1A01G274800.1	Wheat	mitochondrion	28.57	26.93
TraesCS1B01G284200.1	Wheat	mitochondrion	28.1	26.49
Solyc01g007040.2.1	Tomato	cytosol, nucleus, vacuole	10.07	24.02
Solyc05g056500.1.1	Tomato	cytosol	22.25	23.69
Solyc04g077610.2.1	Tomato	cytosol	22.95	23.39
Solyc11g068920.1.1	Tomato	cytosol	22.01	23.27
Solyc01g009330.1.1	Tomato	cytosol	22.72	22.77
Solyc04g008100.1.1	Tomato	cytosol	23.42	22.62
Solyc01g080920.2.1	Tomato	cytosol	21.31	22.25
Solyc01g107980.2.1	Tomato	cytosol	21.31	21.93
Solyc01g007020.2.1	Tomato	cytosol	20.37	21.32
Solyc01g005160.2.1	Tomato	mitochondrion	22.25	21.11
Solyc01g007010.2.1	Tomato	cytosol	19.91	20.83
Solyc01g007000.2.1	Tomato	cytosol, nucleus, vacuole	19.91	20.78
Solyc11g006030.1.1	Tomato	cytosol	20.61	20.47
Solyc01g009320.1.1	Tomato	cytosol	19.91	20.33
Solyc11g068940.1.1	Tomato	cytosol	19.91	20.09
Solyc01g007050.1.1	Tomato	cytosol	19.67	19.95
Solyc06g074140.1.1	Tomato	cytosol	19.44	19.76
Solyc01g007030.2.1	Tomato	cytosol	9.37	18.96

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	InterPro:ARM-like	InterPro:ARM-type_fold	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR003613	InterPro:IPR011989
InterPro:IPR013083	UniProt:K4BT95	PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF106
SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	EnsemblPlantsGene:Solyc04g071030.1	EnsemblPlants:Solyc04g071030.1.1	UniParc:UPI0002766652
InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:K4BT95]

Coordinates

chr4:-:57882497..57883780

Molecular Weight (calculated)

47014.3 Da

IEP (calculated)

8.245

GRAVY (calculated)

0.093

Length

427 amino acids

Sequence
(BLAST)

001: MVRNRREELY VTVPPLFRCP ISMDVMKSPI SLCTGVTYDR SSIQTWLSQG HNTCPATMQI LPSTDFTPNL TLRRLINVWI QHQPASSPGS TTPSSSSVTK
101: TEVVEIVENL NGEVDRLSSL AKIGEFVKCS GENRSFFVNL SDAIANIVGV LVDCDVVEVC EAVVAVLDLV VSENGVKEQL NKEILKSDQK FLPKFLLVLR
201: KGKLSSRIQT ARILEFIALD ADSQRKMVEE QGLLYELHVF TSTETNRFAI EVGLSTLIAV STTRLAKKEL VRFGIIQTIG KILSDSETAR AVVEKSLKLL
301: ETVATCAEGR TAIGKGEECL SAIVTRLMKS SKAATEHGVT VLWSVCCLFR HTAAREVVGK ANGLTKVLLV MQSDCSAAVR QMCGELVKAL RVVNTFSVRT
401: EEVIKIKNYS KSCLASYDTQ TTHIMPY

Best Arabidopsis Sequence Match ( AT5G09800.1 )
(BLAST)

001: MRSDDLYITT VPCFFKCPIS LDVMKSPVSL STGVTYDRVS IQRWLDDGNN TCPATMQILQ NKEFVPNLTL HRLIDHWSDS INRRADSESP ESDTPTRDEI
101: NAAIERFRIE NDARSKILRF ARESDENREF LAGKDDFVAM LVDLISDSRN FSDSQLLLVG EAVKILSMIR RKIFDRRRLS NLILTNGGDC LTSFFLLIKR
201: GNPKLKIDCS AVLEFIAVDA ESKLIIAKGE GLVTEIIKLI SSDSDSSLIE ANLSLLIAIA SSKRVKLALI REKLVTKLTS LLTDPTTSVS VTEKCLKLLE
301: AISSCKEGRS EICDGVCVET VVNKLMKVST AATEHAVTVL WSVCYLFKEK KAQDAVIRIN GVTKILLLLQ SNCSLTVRHM LTDLLKVFKV NSRSCLSVYE
401: TKTTHIMPF

Arabidopsis Description

PUB28U-box domain-containing protein 28 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXE3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.