Factsheet for Solyc01g009320.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, endoplasmic reticulum, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400038196	Potato	cytosol	96.17	96.17
Solyc06g074140.1.1	Tomato	cytosol	67.94	67.62
Solyc11g068940.1.1	Tomato	cytosol	67.46	66.67
VIT_06s0009g00370.t01	Wine grape	cytosol	55.74	57.53
KRG88869	Soybean	cytosol	50.48	50.6
KRH25323	Soybean	cytosol	48.8	50.49
KRH26690	Soybean	cytosol	50.96	49.88
KRH22634	Soybean	cytosol	50.24	49.76
Solyc01g007030.2.1	Tomato	cytosol	24.64	48.82
GSMUA_Achr11P...	Banana	cytosol	42.34	48.36
Solyc01g007000.2.1	Tomato	cytosol, nucleus, vacuole	44.5	45.48
Solyc01g007020.2.1	Tomato	cytosol	44.02	45.1
Solyc01g007010.2.1	Tomato	cytosol	43.54	44.61
Solyc11g068920.1.1	Tomato	cytosol	42.11	43.56
Solyc01g007050.1.1	Tomato	cytosol	43.3	42.99
Solyc01g009330.1.1	Tomato	cytosol	43.54	42.72
Solyc01g007040.2.1	Tomato	cytosol, nucleus, vacuole	17.7	41.34
Solyc01g107980.2.1	Tomato	cytosol	27.03	27.23
Solyc04g008100.1.1	Tomato	cytosol	28.71	27.15
Solyc01g080920.2.1	Tomato	cytosol	26.55	27.14
Solyc01g005160.2.1	Tomato	mitochondrion	27.99	26.0
Solyc11g006030.1.1	Tomato	cytosol	26.55	25.81
Solyc05g056500.1.1	Tomato	cytosol	21.05	21.95
Solyc04g077610.2.1	Tomato	cytosol	21.77	21.72
Solyc11g005700.1.1	Tomato	cytosol	20.81	20.71
Solyc04g071030.1.1	Tomato	cytosol	20.33	19.91

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR003613	InterPro:IPR011989
InterPro:IPR013083	UniProt:K4ATC8	PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF104
SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	EnsemblPlantsGene:Solyc01g009320.1	EnsemblPlants:Solyc01g009320.1.1	UniParc:UPI0002763525
InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:K4ATC8]

Coordinates

chr1:-:3500773..3502283

Molecular Weight (calculated)

47227.2 Da

IEP (calculated)

8.161

GRAVY (calculated)

-0.017

Length

418 amino acids

Sequence
(BLAST)

001: MDEVEIPQYF LCPISLMIMK DPVTTMTGIT YDRESIEMWL LTKEEEAMTT TCPVTKQNLP RDIELLTPNH MLRRIIQAWC IANASKGIDT IPTPKYPLNK
101: SHILRLVRQV NNDKLCVEAL RKIDVLVIEN NEKNKKSLEE VGAIKAMVSF IVKSYKERKL INGLEEALRI FHLVWSSTIE NIQLVKENRD LIEAISWILK
201: SDMTKTQVVI KTQAMMVLKN VIEVSSSNLL SGLNPEFFQD IVNTLRKESE HHISQQATKG ALQVLINACP WGRNKHKIIE SGAIFELIEL ELGNTEKRVS
301: ELVLCVLAHL CTLADGRAEF LKHAGGLSVV AKRTLRVSSS TDDCAIQIFG SISRCSATKE VLMEMLRVGV VSKLCMVIQA SCGEYLKKKA MEILKTHSNV
401: WSDSPCIQVY LLTRYPGQ

Best Arabidopsis Sequence Match ( AT3G11840.1 )
(BLAST)

001: MDQEEEEIEI PNYFICPISL EIMKDPVTTV SGITYDRQNI VKWLEKVPSC PVTKQPLPLD SDLTPNHMLR RLIQHWCVEN ETRGVVRIST PRVPPGKLNV
101: VEEIKNLKKF GQEALGREET LQKLEVLAMD GNNRRLMCEC GVHKSLILFV VKCTSEDEDG RRRIKGLDES LRLLHLIGIP SNDAKTILME NDRVMESLTW
201: VLHQEDFLSK AYTIVLLRNL TEYTSSHIVE RLNPEIFKGI IGFLKDVVNS VNRTSPTVRE TVQSSSRPSL GKTEPSKLDH SLVIKQAVTA ALMILLETSS
301: WSRNRSLLVD LGAVSELIEL EISYTGEKRI TELMLGVLSR LCCCANGRAE ILAHRGGIAV VTKRLLRVSP AADDRAISIL TTVSKFSPEN MVVEEMVNVG
401: TVEKLCSVLG MDCGLNLKEK AKEILKDHFD EWKKFPCIDI TLLTKLLSIS PKGPKI

Arabidopsis Description

PUB24E3 ubiquitin-protein ligase PUB24 [Source:UniProtKB/Swiss-Prot;Acc:Q9SF15]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.