Factsheet for Solyc04g008100.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400075778	Potato	mitochondrion	93.21	93.21
Solyc01g005160.2.1	Tomato	mitochondrion	62.9	61.78
VIT_01s0011g06140.t01	Wine grape	mitochondrion	59.5	59.5
Solyc11g006030.1.1	Tomato	cytosol	45.93	47.21
GSMUA_Achr10P...	Banana	cytosol	39.59	46.54
GSMUA_Achr11P...	Banana	mitochondrion	43.89	45.65
GSMUA_Achr6P11310_001	Banana	cytosol	39.14	45.53
GSMUA_Achr7P18640_001	Banana	mitochondrion	38.91	45.38
GSMUA_Achr6P02470_001	Banana	mitochondrion	38.46	44.74
TraesCS6A01G312600.1	Wheat	mitochondrion	43.89	42.64
TraesCS6B01G342800.1	Wheat	mitochondrion	43.44	42.29
TraesCS6D01G292200.1	Wheat	mitochondrion	43.21	42.07
HORVU4Hr1G064070.1	Barley	mitochondrion	41.63	41.82
TraesCS4B01G228700.1	Wheat	mitochondrion	41.18	41.36
TraesCS4D01G229900.1	Wheat	mitochondrion	40.72	40.91
GSMUA_Achr3P02030_001	Banana	plastid	38.69	40.81
Os03t0240600-01	Rice	plastid	40.95	40.67
TraesCS7D01G201600.1	Wheat	mitochondrion	40.5	40.5
TraesCS7B01G105600.1	Wheat	mitochondrion	40.72	40.36
Os02t0738200-01	Rice	mitochondrion	41.63	40.35
Zm00001d017976_P001	Maize	mitochondrion	41.18	40.27
EES05563	Sorghum	mitochondrion	41.63	39.83
Zm00001d028374_P001	Maize	mitochondrion	39.59	39.15
EER92576	Sorghum	mitochondrion	40.05	38.99
Os06t0248500-00	Rice	mitochondrion	39.59	38.63
KXG19704	Sorghum	mitochondrion	39.59	38.13
Zm00001d044734_P001	Maize	mitochondrion	37.56	37.56
HORVU6Hr1G077120.1	Barley	plastid	43.21	37.3
HORVU7Hr1G040790.2	Barley	plastid	40.5	36.68
Solyc01g007040.2.1	Tomato	cytosol, nucleus, vacuole	14.03	34.64
Solyc01g007010.2.1	Tomato	cytosol	29.86	32.35
Solyc01g007020.2.1	Tomato	cytosol	29.86	32.35
Solyc01g007000.2.1	Tomato	cytosol, nucleus, vacuole	29.86	32.27
Solyc01g107980.2.1	Tomato	cytosol	30.09	32.05
Zm00001d030251_P001	Maize	cytosol	32.13	31.98
Solyc01g009330.1.1	Tomato	cytosol	30.77	31.92
TraesCS5A01G088600.1	Wheat	cytosol	24.66	31.87
Solyc11g068920.1.1	Tomato	cytosol	28.73	31.44
Solyc01g007030.2.1	Tomato	cytosol	14.71	30.81
KXG38738	Sorghum	plastid	32.35	28.95
Solyc01g009320.1.1	Tomato	cytosol	27.15	28.71
Solyc06g074140.1.1	Tomato	cytosol	27.15	28.57
Solyc11g068940.1.1	Tomato	cytosol	25.79	26.95
Solyc11g005700.1.1	Tomato	cytosol	24.66	25.95
Solyc01g007050.1.1	Tomato	cytosol	24.66	25.89
Solyc01g080920.2.1	Tomato	cytosol	23.3	25.18
Solyc04g077610.2.1	Tomato	cytosol	23.08	24.34
Solyc05g056500.1.1	Tomato	cytosol	21.49	23.69
Solyc04g071030.1.1	Tomato	cytosol	22.62	23.42

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR003613	InterPro:IPR011989
InterPro:IPR013083	UniProt:K4BNW6	PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF102
SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	EnsemblPlantsGene:Solyc04g008100.1	EnsemblPlants:Solyc04g008100.1.1	UniParc:UPI0002766D88
InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:K4BNW6]

Coordinates

chr4:-:1757824..1759152

Molecular Weight (calculated)

49965.7 Da

IEP (calculated)

8.880

GRAVY (calculated)

-0.105

Length

442 amino acids

Sequence
(BLAST)

001: MISTWRKKRA SKRSNTKKQI EEKTMELLMV PSHFKCPISL DLMSDPVTLS TGITYDRVSI ETWIENGNQT CPITKKLLNT LEPIPNHTMR KMIQEWCVAN
101: KEYGIERIPT PRIPVTSSEV TGILRKIESC CKLQQGSESS RELVMKMRNM IKESTRNKRC FVANGAGKML SSTLDCFTEK SSVYEVETME EIISALTILL
201: PLDSESKSIL GSKSSLNCMI WFLKCGSLSS RRNSVFLLKE IMRMEEVWRV EELLKIDGGL ESLVKLIKEP ICPTTTKASL LTIYHMVNSS QLSNDKARSK
301: FVDLGLVELL IETLVDCEKS ICEKVLGILA RLCNSQEGRK RANNYALTIP VLIKKLLRVS DLATEFSVSI LWKLLIGKND NVVLINEALQ VGAFQKLLLL
401: IQVGCGENTK EKASELLKLL NLHRGEVECI DSLDLKNLKR PF

Best Arabidopsis Sequence Match ( AT5G37490.1 )
(BLAST)

001: MGFLWRTRSN EKKITPVLSW PESEPESEIT IPPEFQCPIS IDLMKDPVII STGITYDRVS IETWINSGNK TCPVTNTVLT TFDQIPNHTI RKMIQGWCVE
101: KGSPLIQRIP TPRVPLMPCE VYEISRKLSS ATRRGDYEKC GVIIEKIKKL GDESEKNRKC VNENSVGWVL CDCFDKFSGD EKLTFMLNEI LSLLTWMFPI
201: GLEGISKLAS ATSFRCVAGL LKSTDDSVRQ NAAFIMKEIL SLDETRVHSF AVENGVAEAL VKLIRDSVSS SSTKSSLIAI YQMVLQKPEI ASEFLEIGLV
301: SITVEMIVDA ENSVCEKALA VLDAICETEH GREEVRKNAL VMPLLVKKIA KVSELATRSS MSMILKLWKT GNTVAVEDAV RLGAFQKVLL VLQVGYGEET
401: KEKATELLKM MNTQMKLMSD CVDSLKEFKY IKKPF

Arabidopsis Description

PUB21U-box domain-containing protein 21 [Source:UniProtKB/Swiss-Prot;Acc:Q5PNY6]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.