Factsheet for PGSC0003DMT400075778

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
cytosol 1
nucleus 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g008100.1.1	Tomato	cytosol	93.21	93.21
PGSC0003DMT400058621	Potato	cytosol, mitochondrion	63.8	62.53
VIT_01s0011g06140.t01	Wine grape	mitochondrion	60.41	60.41
PGSC0003DMT400073836	Potato	cytosol	45.48	47.97
GSMUA_Achr10P...	Banana	cytosol	39.37	46.28
GSMUA_Achr6P11310_001	Banana	cytosol	39.14	45.53
GSMUA_Achr11P...	Banana	mitochondrion	43.21	44.94
GSMUA_Achr7P18640_001	Banana	mitochondrion	38.46	44.85
GSMUA_Achr6P02470_001	Banana	mitochondrion	37.78	43.95
TraesCS6A01G312600.1	Wheat	mitochondrion	42.76	41.54
TraesCS6B01G342800.1	Wheat	mitochondrion	42.31	41.19
TraesCS6D01G292200.1	Wheat	mitochondrion	42.08	40.97
HORVU4Hr1G064070.1	Barley	mitochondrion	40.27	40.45
TraesCS7D01G201600.1	Wheat	mitochondrion	40.27	40.27
TraesCS7B01G105600.1	Wheat	mitochondrion	40.5	40.13
GSMUA_Achr3P02030_001	Banana	plastid	38.01	40.1
TraesCS4B01G228700.1	Wheat	mitochondrion	39.82	40.0
Os02t0738200-01	Rice	mitochondrion	41.18	39.91
Zm00001d017976_P001	Maize	mitochondrion	40.72	39.82
TraesCS4D01G229900.1	Wheat	mitochondrion	39.59	39.77
Os03t0240600-01	Rice	plastid	39.82	39.55
EES05563	Sorghum	mitochondrion	40.5	38.74
Os06t0248500-00	Rice	mitochondrion	39.59	38.63
Zm00001d028374_P001	Maize	mitochondrion	38.46	38.03
EER92576	Sorghum	mitochondrion	38.91	37.89
KXG19704	Sorghum	mitochondrion	38.69	37.25
Zm00001d044734_P001	Maize	mitochondrion	36.65	36.65
HORVU6Hr1G077120.1	Barley	plastid	42.31	36.52
HORVU7Hr1G040790.2	Barley	plastid	40.27	36.48
PGSC0003DMT400055049	Potato	cytosol, nucleus, plasma membrane	30.09	32.76
PGSC0003DMT400054949	Potato	cytosol	30.09	32.76
PGSC0003DMT400050493	Potato	cytosol	29.41	32.18
TraesCS5A01G088600.1	Wheat	cytosol	24.89	32.16
PGSC0003DMT400055051	Potato	cytosol	28.51	31.98
PGSC0003DMT400054948	Potato	cytosol	20.59	31.93
PGSC0003DMT400066588	Potato	cytosol	29.86	31.81
PGSC0003DMT400055050	Potato	cytosol	28.05	31.63
Zm00001d030251_P001	Maize	cytosol	31.45	31.31
PGSC0003DMT400055045	Potato	cytosol	14.48	30.33
PGSC0003DMT400038197	Potato	cytosol	30.77	29.96
PGSC0003DMT400038196	Potato	cytosol	27.15	28.71
KXG38738	Sorghum	plastid	31.9	28.54
PGSC0003DMT400054947	Potato	cytosol	18.55	27.15
PGSC0003DMT400015179	Potato	cytosol	24.66	27.05
PGSC0003DMT400065698	Potato	cytosol	25.11	26.43
PGSC0003DMT400004594	Potato	cytosol	23.98	26.04
PGSC0003DMT400054946	Potato	cytosol	24.66	25.89
PGSC0003DMT400002079	Potato	cytosol	24.21	25.6
PGSC0003DMT400012566	Potato	cytosol	24.43	24.05
PGSC0003DMT400060272	Potato	cytosol	21.72	23.76

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:102604093	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR003613
InterPro:IPR011989	InterPro:IPR013083	UniProt:M1CVP2	PFAM:PF04564	EnsemblPlantsGene:PGSC0003DMG400029464	PGSC:PGSC0003DMG400029464
EnsemblPlants:PGSC0003DMT400075778	PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF102	SMART:SM00504	SUPFAM:SSF48371
SUPFAM:SSF57850	UniParc:UPI000295709B	InterPro:Ubox_domain	RefSeq:XP_006355051.1	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

Avr9/Cf-9 rapidly elicited protein 74 [Source:PGSC_GENE;Acc:PGSC0003DMG400029464]

Coordinates

chr4:-:2768216..2769742

Molecular Weight (calculated)

50233.3 Da

IEP (calculated)

9.419

GRAVY (calculated)

-0.082

Length

442 amino acids

Sequence
(BLAST)

001: MISTWRKKRA SRRSNSKKQI EEKTMELLMV PSHFKCPISL DLMKDPVTLS TGITYDRVSI ETWIENGNQT CPITKKVVKT LEPIPNHTMR KMIQEWCVVN
101: KDYGIERIPT PRIPVTSDEV TVILRKIESC CKLQQGSESS RELVMKMRKM IKESMRNKRC FVANGAGKIL SSILVGFTEK SSVYEVETME EILSTLTILL
201: PLDGESKSFL GSKSSLNCMI WFLKCGSLSS RRNSVFLLKE IMRMEETWRV EELLKIDGSL ESLVKLVKEP ICPTTTKASL LTIYHMVNSS QLSNEKARSK
301: FVDLGLVELL IETLVDCEKS ICEKVLGILA RICNSQEGKK RANNYALTIP VLIKKLLRVS VLATEFSVSI LWKLLIEKRD NVVLINEALQ VGAFQKLLLL
401: IQVGCSENTK EKASELLKLL NLHRGEVECI DSLDLKNLKR PF

Best Arabidopsis Sequence Match ( AT5G37490.1 )
(BLAST)

001: MGFLWRTRSN EKKITPVLSW PESEPESEIT IPPEFQCPIS IDLMKDPVII STGITYDRVS IETWINSGNK TCPVTNTVLT TFDQIPNHTI RKMIQGWCVE
101: KGSPLIQRIP TPRVPLMPCE VYEISRKLSS ATRRGDYEKC GVIIEKIKKL GDESEKNRKC VNENSVGWVL CDCFDKFSGD EKLTFMLNEI LSLLTWMFPI
201: GLEGISKLAS ATSFRCVAGL LKSTDDSVRQ NAAFIMKEIL SLDETRVHSF AVENGVAEAL VKLIRDSVSS SSTKSSLIAI YQMVLQKPEI ASEFLEIGLV
301: SITVEMIVDA ENSVCEKALA VLDAICETEH GREEVRKNAL VMPLLVKKIA KVSELATRSS MSMILKLWKT GNTVAVEDAV RLGAFQKVLL VLQVGYGEET
401: KEKATELLKM MNTQMKLMSD CVDSLKEFKY IKKPF

Arabidopsis Description

PUB21U-box domain-containing protein 21 [Source:UniProtKB/Swiss-Prot;Acc:Q5PNY6]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.