Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc11g068920.1.1 | Tomato | cytosol | 95.79 | 95.79 |
| PGSC0003DMT400038197 | Potato | cytosol | 69.8 | 62.11 |
| KRH22633 | Soybean | cytosol, nucleus | 60.89 | 61.04 |
| VIT_06s0009g00320.t01 | Wine grape | cytosol | 61.14 | 59.66 |
| HORVU2Hr1G123130.1 | Barley | cytosol | 6.68 | 58.7 |
| KRH26691 | Soybean | cytosol | 56.19 | 58.66 |
| KRH25324 | Soybean | cytosol | 50.49 | 56.2 |
| GSMUA_Achr7P03220_001 | Banana | cytosol | 42.82 | 55.81 |
| GSMUA_Achr10P... | Banana | cytosol | 48.27 | 53.42 |
| GSMUA_Achr5P01000_001 | Banana | cytosol | 46.53 | 52.96 |
| PGSC0003DMT400055049 | Potato | cytosol, nucleus, plasma membrane | 52.48 | 52.22 |
| PGSC0003DMT400054949 | Potato | cytosol | 52.48 | 52.22 |
| PGSC0003DMT400055045 | Potato | cytosol | 27.23 | 52.13 |
| PGSC0003DMT400055050 | Potato | cytosol | 50.0 | 51.53 |
| PGSC0003DMT400055051 | Potato | cytosol | 50.0 | 51.27 |
| GSMUA_Achr8P30400_001 | Banana | cytosol | 46.29 | 50.95 |
| GSMUA_Achr11P... | Banana | cytosol | 46.53 | 50.4 |
| PGSC0003DMT400054947 | Potato | cytosol | 35.64 | 47.68 |
| PGSC0003DMT400054948 | Potato | cytosol | 32.67 | 46.32 |
| Os01t0865700-00 | Rice | plastid | 43.81 | 43.49 |
| OQU85086 | Sorghum | cytosol | 45.79 | 43.33 |
| Os04t0686000-01 | Rice | cytosol | 44.06 | 43.1 |
| EES06927 | Sorghum | cytosol | 45.05 | 42.92 |
| PGSC0003DMT400038196 | Potato | cytosol | 44.06 | 42.58 |
| TraesCS6D01G367600.1 | Wheat | cytosol | 44.55 | 42.55 |
| TraesCS3B01G409400.1 | Wheat | cytosol | 43.81 | 42.45 |
| TraesCS6B01G421900.1 | Wheat | cytosol | 44.06 | 42.38 |
| TraesCS6B01G421400.1 | Wheat | cytosol | 44.06 | 42.38 |
| TraesCS6B01G420600.1 | Wheat | cytosol | 44.06 | 42.38 |
| TraesCS3D01G370000.1 | Wheat | cytosol | 43.81 | 42.34 |
| TraesCS6A01G382300.1 | Wheat | cytosol | 44.06 | 42.18 |
| HORVU3Hr1G083500.1 | Barley | cytosol | 43.07 | 42.13 |
| TraesCS3A01G376900.1 | Wheat | cytosol | 43.56 | 42.11 |
| TraesCS6D01G367100.1 | Wheat | cytosol | 43.56 | 41.9 |
| Os02t0539200-01 | Rice | cytosol | 45.79 | 41.86 |
| EES03937 | Sorghum | plastid | 42.08 | 41.67 |
| Zm00001d042738_P001 | Maize | cytosol | 42.08 | 41.67 |
| TraesCS6A01G382800.1 | Wheat | cytosol | 43.32 | 41.47 |
| TraesCS2B01G314500.1 | Wheat | cytosol | 43.32 | 40.6 |
| TraesCS2A01G298000.1 | Wheat | cytosol | 43.32 | 40.6 |
| HORVU0Hr1G003810.1 | Barley | cytosol | 43.32 | 40.6 |
| Zm00001d016730_P001 | Maize | cytosol | 43.81 | 40.6 |
| TraesCS2D01G296100.1 | Wheat | cytosol | 43.07 | 40.37 |
| EES13136 | Sorghum | cytosol | 42.08 | 39.91 |
| Zm00001d003745_P001 | Maize | nucleus | 43.81 | 39.51 |
| Zm00001d001769_P001 | Maize | cytosol, endoplasmic reticulum, peroxisome | 37.87 | 39.03 |
| HORVU6Hr1G089560.1 | Barley | plastid | 43.56 | 39.02 |
| HORVU6Hr1G089590.1 | Barley | plastid | 43.56 | 38.94 |
| PGSC0003DMT400015179 | Potato | cytosol | 38.12 | 38.21 |
| KXG26241 | Sorghum | cytosol | 43.56 | 38.1 |
| PGSC0003DMT400054946 | Potato | cytosol | 35.89 | 34.44 |
| TraesCS2B01G601300.1 | Wheat | cytosol | 35.4 | 33.49 |
| TraesCSU01G036400.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 35.15 | 33.26 |
| PGSC0003DMT400004594 | Potato | cytosol | 32.67 | 32.43 |
| TraesCS2D01G594700.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 34.16 | 32.32 |
| TraesCS6B01G209000.1 | Wheat | cytosol | 32.43 | 30.97 |
| PGSC0003DMT400073836 | Potato | cytosol | 31.93 | 30.79 |
| TraesCS6A01G176800.1 | Wheat | cytosol | 32.92 | 30.79 |
| PGSC0003DMT400058621 | Potato | cytosol, mitochondrion | 34.16 | 30.6 |
| HORVU6Hr1G034250.1 | Barley | cytosol, nucleus, peroxisome | 32.43 | 30.25 |
| HORVU2Hr1G123050.1 | Barley | cytosol | 25.0 | 30.06 |
| TraesCS6D01G167300.1 | Wheat | cytosol | 32.18 | 30.02 |
| GSMUA_Achr9P29630_001 | Banana | cytosol | 45.05 | 29.45 |
| PGSC0003DMT400075778 | Potato | mitochondrion | 32.18 | 29.41 |
| PGSC0003DMT400066588 | Potato | cytosol | 30.2 | 29.4 |
| KXG23010 | Sorghum | cytosol | 31.93 | 28.41 |
| Os12t0161100-00 | Rice | cytosol | 29.21 | 26.88 |
| PGSC0003DMT400012566 | Potato | cytosol | 27.23 | 24.5 |
| PGSC0003DMT400002079 | Potato | cytosol | 24.26 | 23.45 |
| PGSC0003DMT400065698 | Potato | cytosol | 24.01 | 23.1 |
| PGSC0003DMT400060272 | Potato | cytosol | 21.29 | 21.29 |
| Zm00001d023480_P001 | Maize | cytosol | 28.96 | 20.93 |
Protein Annotations
| Gene3D:1.25.10.10 | EntrezGene:102591309 | Gene3D:3.30.40.10 | MapMan:35.1 | InterPro:ARM-like | InterPro:ARM-type_fold |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 | GO:GO:0005488 | GO:GO:0006464 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | InterPro:IPR003613 |
| InterPro:IPR011989 | InterPro:IPR013083 | UniProt:M1BQD7 | PFAM:PF04564 | EnsemblPlantsGene:PGSC0003DMG400019623 | PGSC:PGSC0003DMG400019623 |
| EnsemblPlants:PGSC0003DMT400050493 | PFscan:PS51698 | PANTHER:PTHR22849 | PANTHER:PTHR22849:SF11 | SMART:SM00504 | SUPFAM:SSF48371 |
| SUPFAM:SSF57850 | UniParc:UPI0002963693 | InterPro:Ubox_domain | RefSeq:XP_006362850.1 | InterPro:Znf_RING/FYVE/PHD | SEG:seg |
Description
U box [Source:PGSC_GENE;Acc:PGSC0003DMG400019623]
Coordinates
chr11:+:40755600..40756908
Molecular Weight (calculated)
45644.0 Da
IEP (calculated)
8.747
GRAVY (calculated)
-0.086
Length
404 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEIDIPSYF LCPISMEVMR DPVTISTGIT YDRQNIEKWL FSCKHTTCPV TNQDLKFKDL TPNHNLRRLI QSWCMLNSSN GIQRMPTPKP QVQRAHVVRI
101: LNEAQKYPDM EFSCLRRIKS IARVSESNKM CLESAGVVDF LTSIMMKKKE ESEASDEALN ILFHLNPSDT ELKKLINSQN DHHFLDSLLQ FLNNGHVQSR
201: TNAIALLRST LNVADPSQLI GIQPVYIKGI VCILNDKISQ QATKVALKLL VELCPWGRNK IKAVENGAVF ALIELLLDTN ERRVCELILT ALDHLCTCAD
301: GRSELLRHGG GIAIVSKKIL RVSHLASDRG VRILYSISKF LATCYSTKVL QEMLQVGVVS KLCLVLQVDV SPKTKEKAKE ILRLHSRVWR DSSCIPPHLL
401: SSYP
101: LNEAQKYPDM EFSCLRRIKS IARVSESNKM CLESAGVVDF LTSIMMKKKE ESEASDEALN ILFHLNPSDT ELKKLINSQN DHHFLDSLLQ FLNNGHVQSR
201: TNAIALLRST LNVADPSQLI GIQPVYIKGI VCILNDKISQ QATKVALKLL VELCPWGRNK IKAVENGAVF ALIELLLDTN ERRVCELILT ALDHLCTCAD
301: GRSELLRHGG GIAIVSKKIL RVSHLASDRG VRILYSISKF LATCYSTKVL QEMLQVGVVS KLCLVLQVDV SPKTKEKAKE ILRLHSRVWR DSSCIPPHLL
401: SSYP
001: MSGGIMDEEI EIPPFFLCPI SLEIMKDPVI VSTGITYDRD SIEKWLFAGK KNSCPVTKQD ITDADLTPNH TLRRLIQSWC TLNASYGVER IPTPRPPICK
101: SEIEKLIRDS ASSHENQVKC LKRLRQIVSE NATNKRCLEA AGVPEFLANI VSNDSENGSL TDEALNLLYH LETSETVLKN LLNNKKDNNI VKSLTKIMQR
201: GMYESRVYAT LLLKNILEVA DPMQSMTLKP EVFTEVVQIL DDRISQKATK AAMHILVNIC PWGRNRHKAV EAGVISVIIE LLMDESFTSE RRGPEMAMVV
301: LDLLCQCAEG RAEFLNHGAA IAVVCKKILR VSQTASDRAV RVLLSVGRFC ATPALLHEML QLGVVAKLCL VLQVSCGGKT KEKAKELLKL HARVWKDSPC
401: LPKNMILAYP C
101: SEIEKLIRDS ASSHENQVKC LKRLRQIVSE NATNKRCLEA AGVPEFLANI VSNDSENGSL TDEALNLLYH LETSETVLKN LLNNKKDNNI VKSLTKIMQR
201: GMYESRVYAT LLLKNILEVA DPMQSMTLKP EVFTEVVQIL DDRISQKATK AAMHILVNIC PWGRNRHKAV EAGVISVIIE LLMDESFTSE RRGPEMAMVV
301: LDLLCQCAEG RAEFLNHGAA IAVVCKKILR VSQTASDRAV RVLLSVGRFC ATPALLHEML QLGVVAKLCL VLQVSCGGKT KEKAKELLKL HARVWKDSPC
401: LPKNMILAYP C
Arabidopsis Description
PUB23E3 ubiquitin-protein ligase PUB23 [Source:UniProtKB/Swiss-Prot;Acc:Q84TG3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.