Factsheet for Zm00001d023480_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d010602_P001	golgi
Zm00001d038447_P001	golgi
Zm00001d043015_P001	golgi
Zm00001d044874_P001
Zm00001d052194_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G35930.1	Zm00001d044874_P001	AT4G25200.1	21798944
AT2G35930.1	Zm00001d052194_P001	AT4G25200.1	21798944
AT3G52450.1	Zm00001d010602_P001	AT1G07000.1	23170036
AT3G52450.1	Zm00001d038447_P001	AT1G07000.1	23170036
AT3G52450.1	Zm00001d043015_P001	AT1G07000.1	23170036
AT3G52450.1	Zm00001d010602_P001	AT1G07000.1	23170036
AT3G52450.1	Zm00001d038447_P001	AT1G07000.1	23170036
AT3G52450.1	Zm00001d043015_P001	AT1G07000.1	23170036

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG23010	Sorghum	cytosol	57.07	70.26
Os12t0161100-00	Rice	cytosol	45.8	58.31
TraesCS6B01G209000.1	Wheat	cytosol	43.47	57.45
HORVU6Hr1G034250.1	Barley	cytosol, nucleus, peroxisome	43.83	56.58
TraesCS6D01G167300.1	Wheat	cytosol	43.83	56.58
TraesCS6A01G176800.1	Wheat	cytosol	43.65	56.48
Zm00001d019807_P001	Maize	extracellular	7.33	43.62
GSMUA_Achr7P03220_001	Banana	cytosol	19.5	35.16
KRH22633	Soybean	cytosol, nucleus	24.33	33.75
GSMUA_Achr5P01000_001	Banana	cytosol	20.93	32.96
Zm00001d042738_P001	Maize	cytosol	23.79	32.6
Solyc01g007040.2.1	Tomato	cytosol, nucleus, vacuole	10.2	31.84
KRH26691	Soybean	cytosol	22.0	31.78
VIT_06s0009g00320.t01	Wine grape	cytosol	23.43	31.64
VIT_08s0105g00190.t01	Wine grape	cytosol, plastid, vacuole	22.54	30.66
VIT_08s0105g00180.t01	Wine grape	cytosol, plastid, vacuole	22.54	30.66
Zm00001d001769_P001	Maize	cytosol, endoplasmic reticulum, peroxisome	21.47	30.61
CDX95337	Canola	cytosol	22.18	30.32
KRH25324	Soybean	cytosol	19.68	30.3
KRH68014	Soybean	cytosol	22.72	30.24
KRH35744	Soybean	cytosol	22.36	29.83
CDX78096	Canola	cytosol	20.75	29.82
CDX84168	Canola	cytosol	21.65	29.8
KRH32856	Soybean	cytosol	22.36	29.76
KRH72176	Soybean	cytosol	22.18	29.67
CDY23218	Canola	cytosol	20.93	29.55
CDY40422	Canola	cytosol	21.65	29.37
CDY32070	Canola	cytosol	21.65	29.37
Bra017278.1-P	Field mustard	cytosol	21.65	29.37
CDX75084	Canola	cytosol	21.29	29.31
Zm00001d016730_P001	Maize	cytosol	22.72	29.13
Solyc01g009330.1.1	Tomato	cytosol	22.18	29.11
CDY59599	Canola	cytosol	21.29	29.1
PGSC0003DMT400050493	Potato	cytosol	20.93	28.96
Solyc11g068920.1.1	Tomato	cytosol	20.93	28.96
AT2G35930.1	Thale cress	cytosol	21.29	28.95
Bra005309.1-P	Field mustard	cytosol	20.04	28.94
Zm00001d002498_P001	Maize	cytosol	21.47	28.92
PGSC0003DMT400055045	Potato	cytosol	10.91	28.91
KRG96257	Soybean	cytosol	21.65	28.88
KRG96268	Soybean	cytosol	21.65	28.88
Solyc01g007000.2.1	Tomato	cytosol, nucleus, vacuole	21.11	28.85
Bra023044.1-P	Field mustard	cytosol	21.11	28.85
CDX84587	Canola	cytosol	21.11	28.85
CDX79645	Canola	cytosol	20.93	28.68
PGSC0003DMT400054949	Potato	cytosol	20.75	28.57
Solyc01g007030.2.1	Tomato	cytosol	10.73	28.44
PGSC0003DMT400055051	Potato	cytosol	20.04	28.43
PGSC0003DMT400055049	Potato	cytosol, nucleus, plasma membrane	20.57	28.33
PGSC0003DMT400055050	Potato	cytosol	19.86	28.32
Solyc01g007010.2.1	Tomato	cytosol	20.39	27.94
Zm00001d026040_P001	Maize	cytosol	20.39	27.87
Bra033430.1-P	Field mustard	cytosol	21.11	27.83
AT3G52450.1	Thale cress	cytosol	21.65	27.82
Bra012803.1-P	Field mustard	cytosol	20.93	27.66
Bra006925.1-P	Field mustard	cytosol	21.47	27.59
Zm00001d017671_P001	Maize	cytosol	20.93	27.53
Zm00001d003745_P001	Maize	nucleus	22.0	27.46
Solyc01g007020.2.1	Tomato	cytosol	20.04	27.45
PGSC0003DMT400038197	Potato	cytosol	21.65	26.65
Zm00001d044734_P001	Maize	mitochondrion	20.93	26.47
Zm00001d016764_P001	Maize	extracellular	19.14	25.6
Zm00001d050712_P001	Maize	extracellular, plastid	18.6	25.43
Zm00001d003624_P001	Maize	cytosol	18.07	25.25
Zm00001d030251_P001	Maize	cytosol	18.96	23.87
PGSC0003DMT400054947	Potato	cytosol	12.7	23.51
PGSC0003DMT400054948	Potato	cytosol	11.99	23.51
Zm00001d016719_P001	Maize	cytosol	17.89	23.31
Zm00001d028374_P001	Maize	mitochondrion	18.6	23.27
Zm00001d050689_P001	Maize	cytosol	17.53	22.84
Zm00001d028294_P001	Maize	cytosol	18.43	22.44
Zm00001d048008_P001	Maize	cytosol	18.43	22.25
Zm00001d017976_P001	Maize	mitochondrion	17.71	21.9
Zm00001d038280_P001	Maize	cytosol	17.17	21.24
Zm00001d025379_P001	Maize	cytosol, mitochondrion, peroxisome, plastid	16.28	20.5
Zm00001d000044_P001	Maize	cytosol	8.23	19.91
GSMUA_Achr9P29630_001	Banana	cytosol	21.11	19.09

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	UniProt:A0A1D6ITH7	ProteinID:AQK39370.1	InterPro:ARM-type_fold	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR003613	InterPro:IPR013083
PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF30	SMART:SM00504	SMART:SM00597
SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI000844B7F6	InterPro:Ubox_domain	EnsemblPlantsGene:Zm00001d023480	EnsemblPlants:Zm00001d023480_P001
EnsemblPlants:Zm00001d023480_T001	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_TTF	SEG:seg	:	:

Description

plant U-box 24

Coordinates

chr10:+:6935822..6940532

Molecular Weight (calculated)

60238.4 Da

IEP (calculated)

8.031

GRAVY (calculated)

-0.262

Length

559 amino acids

Sequence
(BLAST)

001: MEDLSAMRHH LMCPISLQPM QDPVTAPTGI TYDRRAIERW LAAGHATCPV TGQPLALADL TPNHTLRRLI QSWCAPRPST PPEAAGANKP ADGDDAVEHS
101: QSQTDDDVVK KLLRAATSPP IDVLREAAAA AFESDAARRR MVDAGVLQRV LRGVAAIASE VKADDPRHHE NESSSAIARA IEARLDLARA LAVSSCDDDE
201: LRPQLVADSL VHGLLDAATD VLAALERAGA GGAGGDAARA SAVRLLDSVT GAAGAAVLER LRPGLFRAVT AVKRNRSSDL DDNTTDTSRS VLRLKQTNVA
301: ASVPKSSAQS QREIDLDELP YDPADRKRIT EYTKNPKKQD EIRRRYLTRG PYRPPPNFEY PYRDIGSDRR RFNPEWFKEY GGWLEYSDKV HKAFCLCCYL
401: FRDCNEGQAG NDAFAINGWN GWNKKCRLDT HVGKGNASSF HNVALALALL AELCACADGR AAVAAHPAGV AVVARRLLRV SAAADACAVR VLAAVGGRAA
501: SPEVLREMAR VGAVGKLCCV LQADCDAAVK DAARAVLRLH HGVWSGSPCV SAYLLSRYL

Best Arabidopsis Sequence Match ( AT1G19260.1 )
(BLAST)

001: MYRFLKRKSP PPPDINLNEL PSDPAKRKSI LSYHPNQRDE VRREYLIRGP CQPRGHKFKQ IAIGKVLRRF NPKWFDLYGD WLEYSVEKEK AFCLYCYLFR
101: DQTGNQGGSD SFLSTGFCSW NKADRLDQHV GLDVNSFHNN AKRKCEDLMR QGQSIKHALH KQTDVVKNDY RIWLNASIDV SRHLLHQGLP FRGHDESEES
201: TNKGNFVELL KYTAGQNEVV KKVVLKNAPK NNQMTSPPIQ KDIVHCFSKE VTRSIIEEMD NDVFGLLVDE SADASDKEQM AVVFRFVDKY GVVKERFIGV
301: IHVQETSSLS LKSAIDSLFA KYGLSLKKLR GQGYDGASNM KGEFNGLRSL ILKESSSAYY VHCFAHQLQL VVMAVAKKHV EVGEFFYMIS VLLNVVGASC
401: KRKDKIREIH RQKVEEKISN GEIKTGTGLN QELSLQRPGN TRWGSHYKTL LRLEELFSSI VIVLEYIQDE GTDTTKRQQA YGILKYFHTF DFVFYLELML
501: LVMGLTDSLS KALQRKDQDI LNAISLVKTT KCQLQKVRDD GWDAFMAKVS SFSEKNNTGM LKMEEEFVDS RRPRKKTGIT NLHHYKVDCF YTVLDMQLQE
601: FNDRFDEVNS ELLICMSSLS PIDSFRQFDK SMLVRLTEFY PDDFSFVERR SLDHQLEIYL DNVKNDERFT DLKCLGDLAR VMVETRKHLS HPLVYRLLKV
701: SLILPVATAT VERCFSAMNF VKTTLRNRIG DMFLSDCLVC FIEKQALNTV TNESVIKRFQ DMSERRVHL

Arabidopsis Description

TTF-type zinc finger protein with HAT dimerization domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4IE28]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.