Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY59599 | Canola | cytosol | 87.36 | 92.91 |
| Bra006925.1-P | Field mustard | cytosol | 92.64 | 92.64 |
| CDX78096 | Canola | cytosol | 82.76 | 92.55 |
| CDX95337 | Canola | cytosol | 85.98 | 91.44 |
| Bra012803.1-P | Field mustard | cytosol | 88.51 | 91.02 |
| CDY23218 | Canola | cytosol | 81.84 | 89.9 |
| Bra033430.1-P | Field mustard | cytosol | 86.67 | 88.92 |
| AT2G35930.1 | Thale cress | cytosol | 76.09 | 80.54 |
| KRH68014 | Soybean | cytosol | 57.47 | 59.52 |
| VIT_08s0105g00190.t01 | Wine grape | cytosol, plastid, vacuole | 55.86 | 59.12 |
| VIT_08s0105g00180.t01 | Wine grape | cytosol, plastid, vacuole | 55.63 | 58.88 |
| KRH35744 | Soybean | cytosol | 56.32 | 58.47 |
| Solyc01g007040.2.1 | Tomato | cytosol, nucleus, vacuole | 23.91 | 58.1 |
| KRG96257 | Soybean | cytosol | 55.86 | 58.0 |
| KRG96268 | Soybean | cytosol | 55.63 | 57.76 |
| PGSC0003DMT400054949 | Potato | cytosol | 53.56 | 57.39 |
| PGSC0003DMT400055049 | Potato | cytosol, nucleus, plasma membrane | 53.1 | 56.9 |
| HORVU2Hr1G123130.1 | Barley | cytosol | 5.98 | 56.52 |
| Solyc01g007000.2.1 | Tomato | cytosol, nucleus, vacuole | 53.1 | 56.48 |
| GSMUA_Achr7P03220_001 | Banana | cytosol | 40.23 | 56.45 |
| PGSC0003DMT400055045 | Potato | cytosol | 27.36 | 56.4 |
| Solyc01g007030.2.1 | Tomato | cytosol | 27.36 | 56.4 |
| PGSC0003DMT400055050 | Potato | cytosol | 50.8 | 56.38 |
| Solyc01g007020.2.1 | Tomato | cytosol | 52.87 | 56.37 |
| PGSC0003DMT400055051 | Potato | cytosol | 50.8 | 56.09 |
| Solyc01g007010.2.1 | Tomato | cytosol | 52.18 | 55.64 |
| KRH72176 | Soybean | cytosol | 52.87 | 55.02 |
| KRH32856 | Soybean | cytosol | 52.41 | 54.29 |
| PGSC0003DMT400054948 | Potato | cytosol | 34.71 | 52.98 |
| PGSC0003DMT400054947 | Potato | cytosol | 36.09 | 51.99 |
| GSMUA_Achr5P01000_001 | Banana | cytosol | 40.92 | 50.14 |
| GSMUA_Achr10P... | Banana | cytosol | 42.07 | 50.14 |
| GSMUA_Achr11P... | Banana | cytosol | 42.53 | 49.6 |
| GSMUA_Achr8P30400_001 | Banana | cytosol | 40.0 | 47.41 |
| Os04t0686000-01 | Rice | cytosol | 42.76 | 45.04 |
| OQU85086 | Sorghum | cytosol | 43.68 | 44.5 |
| EES06927 | Sorghum | cytosol | 42.99 | 44.1 |
| EES03937 | Sorghum | plastid | 41.15 | 43.87 |
| TraesCS6D01G367100.1 | Wheat | cytosol | 41.84 | 43.33 |
| TraesCS6D01G367600.1 | Wheat | cytosol | 42.07 | 43.26 |
| Os01t0865700-00 | Rice | plastid | 40.23 | 43.0 |
| Os02t0539200-01 | Rice | cytosol | 43.68 | 42.99 |
| Zm00001d042738_P001 | Maize | cytosol | 40.23 | 42.89 |
| TraesCS6B01G421900.1 | Wheat | cytosol | 41.38 | 42.86 |
| HORVU3Hr1G083500.1 | Barley | cytosol | 40.69 | 42.86 |
| TraesCS3D01G370000.1 | Wheat | cytosol | 41.15 | 42.82 |
| TraesCS3B01G409400.1 | Wheat | cytosol | 40.92 | 42.69 |
| TraesCS3A01G376900.1 | Wheat | cytosol | 40.92 | 42.58 |
| TraesCS6B01G421400.1 | Wheat | cytosol | 40.92 | 42.38 |
| TraesCS6B01G420600.1 | Wheat | cytosol | 40.92 | 42.38 |
| TraesCS6A01G382300.1 | Wheat | cytosol | 40.92 | 42.18 |
| TraesCS6A01G382800.1 | Wheat | cytosol | 40.69 | 41.94 |
| TraesCS2B01G314500.1 | Wheat | cytosol | 41.15 | 41.53 |
| TraesCS2A01G298000.1 | Wheat | cytosol | 40.92 | 41.3 |
| Zm00001d016730_P001 | Maize | cytosol | 41.38 | 41.28 |
| TraesCS2D01G296100.1 | Wheat | cytosol | 40.69 | 41.07 |
| EES13136 | Sorghum | cytosol | 40.0 | 40.85 |
| HORVU0Hr1G003810.1 | Barley | cytosol | 40.46 | 40.84 |
| HORVU6Hr1G089560.1 | Barley | plastid | 41.84 | 40.35 |
| HORVU6Hr1G089590.1 | Barley | plastid | 41.84 | 40.27 |
| Zm00001d003745_P001 | Maize | nucleus | 40.46 | 39.29 |
| KXG26241 | Sorghum | cytosol | 41.38 | 38.96 |
| Zm00001d001769_P001 | Maize | cytosol, endoplasmic reticulum, peroxisome | 34.94 | 38.78 |
| AT3G11840.1 | Thale cress | cytosol | 36.78 | 35.09 |
| TraesCSU01G036400.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 33.33 | 33.96 |
| TraesCS2D01G594700.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 33.33 | 33.96 |
| TraesCS2B01G601300.1 | Wheat | cytosol | 32.87 | 33.49 |
| TraesCS6B01G209000.1 | Wheat | cytosol | 30.11 | 30.97 |
| TraesCS6A01G176800.1 | Wheat | cytosol | 30.57 | 30.79 |
| TraesCS6D01G167300.1 | Wheat | cytosol | 30.34 | 30.48 |
| HORVU6Hr1G034250.1 | Barley | cytosol, nucleus, peroxisome | 30.11 | 30.25 |
| AT3G19380.1 | Thale cress | cytosol, golgi, plastid | 29.2 | 30.17 |
| HORVU2Hr1G123050.1 | Barley | cytosol | 23.22 | 30.06 |
| KXG23010 | Sorghum | cytosol | 30.34 | 29.07 |
| AT1G49780.1 | Thale cress | cytoskeleton, cytosol, vacuole | 27.82 | 28.74 |
| Os12t0161100-00 | Rice | cytosol | 28.97 | 28.7 |
| GSMUA_Achr9P29630_001 | Banana | cytosol | 39.31 | 27.67 |
| AT5G37490.1 | Thale cress | cytosol, nucleus, peroxisome | 27.36 | 27.36 |
| AT1G66160.1 | Thale cress | cytosol | 26.9 | 27.15 |
| AT5G09800.1 | Thale cress | cytosol | 24.83 | 26.41 |
| AT5G64660.1 | Thale cress | cytosol | 25.29 | 26.19 |
| AT3G18710.1 | Thale cress | cytosol | 24.83 | 26.02 |
| AT3G02840.1 | Thale cress | mitochondrion | 21.15 | 24.27 |
| AT5G65920.1 | Thale cress | cytosol | 23.45 | 22.97 |
| AT3G49810.1 | Thale cress | cytosol | 23.22 | 22.54 |
| Zm00001d023480_P001 | Maize | cytosol | 27.82 | 21.65 |
Protein Annotations
| Gene3D:1.25.10.10 | Gene3D:3.30.40.10 | MapMan:35.1 | EntrezGene:824410 | UniProt:A0A178VML4 | ProteinID:AEE78947.1 |
| EMBL:AK228993 | InterPro:ARM-like | InterPro:ARM-type_fold | ArrayExpress:AT3G52450 | EnsemblPlantsGene:AT3G52450 | RefSeq:AT3G52450 |
| TAIR:AT3G52450 | RefSeq:AT3G52450-TAIR-G | EnsemblPlants:AT3G52450.1 | TAIR:AT3G52450.1 | EMBL:BT015763 | EMBL:BT020203 |
| ProteinID:CAB43434.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006464 |
| GO:GO:0006950 | GO:GO:0006952 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009414 | GO:GO:0009628 |
| GO:GO:0009719 | GO:GO:0009987 | GO:GO:0010200 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 |
| GO:GO:0051865 | InterPro:IPR003613 | InterPro:IPR011989 | InterPro:IPR013083 | RefSeq:NP_190813.1 | ProteinID:OAP06343.1 |
| PFAM:PF04564 | PO:PO:0000035 | PO:PO:0000037 | PO:PO:0000293 | PO:PO:0001017 | PO:PO:0006070 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0009005 | PO:PO:0009025 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025195 | PO:PO:0025281 | PFscan:PS51698 | PANTHER:PTHR22849 | PANTHER:PTHR22849:SF65 | Symbol:PUB22 |
| UniProt:Q9SVC6 | SMART:SM00504 | SUPFAM:SSF48371 | SUPFAM:SSF57850 | UniParc:UPI00000A269E | InterPro:Ubox_domain |
| InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : | : |
Description
PUB22RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178VML4]
Coordinates
chr3:-:19440617..19442427
Molecular Weight (calculated)
48879.7 Da
IEP (calculated)
8.318
GRAVY (calculated)
-0.115
Length
435 amino acids
Sequence
(BLAST)
(BLAST)
001: MDQEIEIPSF FLCPISLDIM KDPVIVSTGI TYDRESIEKW LFSGKKNSCP VTKQVITETD LTPNHTLRRL IQSWCTLNAS YGIERIPTPK PPICKSEIEK
101: LIKESSSSHL NQVKCLKRLR QIVSENTTNK RCLEAAEVPE FLANIVSNSV DTYNSPSSSL SSSNLNDMCQ SNMLENRFDS SRSLMDEALS VLYHLDTSET
201: ALKSLLNNKK GTNLVKTLTK IMQRGIYESR AYAALLLKKL LEVADPMQII LLERELFGEV IQILHDQISH KATRSAMQIL VITCPWGRNR HKAVEGGTIS
301: MIIELLMDDT FSSERRNSEM AMVVLDMLCQ CAEGRAEFLN HGAAIAVVSK KILRVSQITS ERAVRVLLSV GRFCATPSLL QEMLQLGVVA KLCLVLQVSC
401: GNKTKEKAKE LLKLHARVWR ESPCVPRNLY DSYPA
101: LIKESSSSHL NQVKCLKRLR QIVSENTTNK RCLEAAEVPE FLANIVSNSV DTYNSPSSSL SSSNLNDMCQ SNMLENRFDS SRSLMDEALS VLYHLDTSET
201: ALKSLLNNKK GTNLVKTLTK IMQRGIYESR AYAALLLKKL LEVADPMQII LLERELFGEV IQILHDQISH KATRSAMQIL VITCPWGRNR HKAVEGGTIS
301: MIIELLMDDT FSSERRNSEM AMVVLDMLCQ CAEGRAEFLN HGAAIAVVSK KILRVSQITS ERAVRVLLSV GRFCATPSLL QEMLQLGVVA KLCLVLQVSC
401: GNKTKEKAKE LLKLHARVWR ESPCVPRNLY DSYPA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.