Factsheet for Zm00001d001769_P001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol, peroxisome

Predictor Summary:

cytosol 1
mitochondrion 1
endoplasmic reticulum 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, peroxisome
Any Predictor:	cytosol, mitochondrion, peroxisome
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	endoplasmic reticulum
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d010602_P001	golgi
Zm00001d038447_P001	golgi
Zm00001d043015_P001	golgi
Zm00001d044874_P001
Zm00001d052194_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G35930.1	Zm00001d044874_P001	AT4G25200.1	21798944
AT2G35930.1	Zm00001d052194_P001	AT4G25200.1	21798944
AT3G52450.1	Zm00001d010602_P001	AT1G07000.1	23170036
AT3G52450.1	Zm00001d038447_P001	AT1G07000.1	23170036
AT3G52450.1	Zm00001d043015_P001	AT1G07000.1	23170036
AT3G52450.1	Zm00001d010602_P001	AT1G07000.1	23170036
AT3G52450.1	Zm00001d038447_P001	AT1G07000.1	23170036
AT3G52450.1	Zm00001d043015_P001	AT1G07000.1	23170036

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES13136	Sorghum	cytosol	89.8	82.63
HORVU2Hr1G123130.1	Barley	cytosol	8.67	73.91
Os04t0686000-01	Rice	cytosol	70.15	66.59
HORVU2Hr1G123050.1	Barley	cytosol	47.19	55.06
TraesCS2B01G601300.1	Wheat	cytosol	58.16	53.4
TraesCSU01G036400.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	57.4	52.69
TraesCS2D01G594700.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	57.14	52.46
GSMUA_Achr5P01000_001	Banana	cytosol	41.84	46.2
GSMUA_Achr7P03220_001	Banana	cytosol	35.71	45.16
Zm00001d042738_P001	Maize	cytosol	45.15	43.38
VIT_08s0105g00180.t01	Wine grape	cytosol, plastid, vacuole	44.13	42.09
VIT_08s0105g00190.t01	Wine grape	cytosol, plastid, vacuole	43.62	41.61
Zm00001d019807_P001	Maize	extracellular	9.95	41.49
VIT_06s0009g00320.t01	Wine grape	cytosol	43.62	41.3
KRH26691	Soybean	cytosol	40.56	41.09
KRH22633	Soybean	cytosol, nucleus	41.84	40.69
Zm00001d003745_P001	Maize	nucleus	45.66	39.96
KRH72176	Soybean	cytosol	42.6	39.95
Zm00001d016730_P001	Maize	cytosol	44.13	39.68
PGSC0003DMT400054948	Potato	cytosol	28.83	39.65
PGSC0003DMT400055049	Potato	cytosol, nucleus, plasma membrane	40.82	39.41
KRH32856	Soybean	cytosol	42.09	39.29
PGSC0003DMT400054949	Potato	cytosol	40.31	38.92
KRH35744	Soybean	cytosol	41.58	38.9
Solyc01g007000.2.1	Tomato	cytosol, nucleus, vacuole	40.56	38.88
Solyc01g007030.2.1	Tomato	cytosol	20.92	38.86
PGSC0003DMT400055045	Potato	cytosol	20.92	38.86
KRH68014	Soybean	cytosol	41.33	38.57
PGSC0003DMT400055050	Potato	cytosol	38.27	38.27
Solyc01g007020.2.1	Tomato	cytosol	39.8	38.24
KRG96257	Soybean	cytosol	40.82	38.19
CDY32070	Canola	cytosol	40.05	38.11
CDX78096	Canola	cytosol	37.76	38.05
AT2G35930.1	Thale cress	cytosol	39.8	37.96
KRG96268	Soybean	cytosol	40.56	37.95
PGSC0003DMT400050493	Potato	cytosol	39.03	37.87
Solyc11g068920.1.1	Tomato	cytosol	39.03	37.87
PGSC0003DMT400055051	Potato	cytosol	38.01	37.82
CDX84168	Canola	cytosol	39.03	37.68
Bra017278.1-P	Field mustard	cytosol	39.54	37.62
CDY40422	Canola	cytosol	39.54	37.62
Solyc01g007010.2.1	Tomato	cytosol	39.03	37.5
Solyc01g007040.2.1	Tomato	cytosol, nucleus, vacuole	17.09	37.43
CDX79645	Canola	cytosol	38.78	37.25
CDX75084	Canola	cytosol	38.52	37.19
CDX84587	Canola	cytosol	38.78	37.16
CDX95337	Canola	cytosol	38.78	37.16
CDY59599	Canola	cytosol	38.78	37.16
Bra023044.1-P	Field mustard	cytosol	38.52	36.92
KRH25324	Soybean	cytosol	33.93	36.64
Solyc01g009330.1.1	Tomato	cytosol	39.8	36.62
CDY23218	Canola	cytosol	36.99	36.62
Bra012803.1-P	Field mustard	cytosol	39.29	36.41
Bra005309.1-P	Field mustard	cytosol	35.71	36.18
AT3G52450.1	Thale cress	cytosol	38.78	34.94
Bra006925.1-P	Field mustard	cytosol	38.78	34.94
Bra033430.1-P	Field mustard	cytosol	37.76	34.91
PGSC0003DMT400054947	Potato	cytosol	26.28	34.11
PGSC0003DMT400038197	Potato	cytosol	39.29	33.92
Zm00001d044734_P001	Maize	mitochondrion	34.44	30.54
Zm00001d002498_P001	Maize	cytosol	31.63	29.88
Zm00001d026040_P001	Maize	cytosol	30.36	29.1
Zm00001d050712_P001	Maize	extracellular, plastid	29.85	28.61
Zm00001d016764_P001	Maize	extracellular	29.85	27.99
Zm00001d003624_P001	Maize	cytosol	28.32	27.75
Zm00001d017976_P001	Maize	mitochondrion	31.12	26.99
Zm00001d017671_P001	Maize	cytosol	29.08	26.82
Zm00001d028374_P001	Maize	mitochondrion	29.08	25.5
GSMUA_Achr9P29630_001	Banana	cytosol	40.05	25.4
Zm00001d030251_P001	Maize	cytosol	28.57	25.23
Zm00001d028294_P001	Maize	cytosol	28.83	24.62
Zm00001d016719_P001	Maize	cytosol	26.28	24.01
Zm00001d048008_P001	Maize	cytosol	28.32	23.97
Zm00001d025379_P001	Maize	cytosol, mitochondrion, peroxisome, plastid	27.04	23.87
Zm00001d050689_P001	Maize	cytosol	25.26	23.08
Zm00001d038280_P001	Maize	cytosol	26.02	22.57
Zm00001d000044_P001	Maize	cytosol	13.01	22.08
Zm00001d023480_P001	Maize	cytosol	30.61	21.47

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	UniProt:A0A1D6DSN6	InterPro:ARM-like	InterPro:ARM-type_fold
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0016874	GO:GO:0019538
InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	ProteinID:ONM11920.1	PFAM:PF04564	PFscan:PS51698
PANTHER:PTHR22849	PANTHER:PTHR22849:SF11	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI000843C4AF
InterPro:Ubox_domain	EnsemblPlantsGene:Zm00001d001769	EnsemblPlants:Zm00001d001769_P001	EnsemblPlants:Zm00001d001769_T001	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

E3 ubiquitin-protein ligase PUB23

Coordinates

chr2:-:358456..360837

Molecular Weight (calculated)

41764.3 Da

IEP (calculated)

7.046

GRAVY (calculated)

0.085

Length

392 amino acids

Sequence
(BLAST)

001: MEEDPQPQVE VPCYFLCPIS LAIMRDPVTL PTGITYDRDG IERWLLTATT CPLTKQPVPA DCDPTPNHTL RRLIQSWCAL HDADSADRVH TPKPRVDRTA
101: VTALVSRVHS AATGSAPPQR PQLLAALREL RDVAAESDRN RKLVAAVPGA VDVLAAVFAA SANKSSEGTG TADAVRDDAL EVIALLPVPE QCLRRLEETN
201: EALVSALVSA LQWSSAPSRA RAALLLERVT AALPPSRLAS LPEQVFREAV ELLRDRPVSR PATKAALQVL VRTAAWGRNR VKAVDAGAVP VLVDMLFDDG
301: AERRACELVL AALDRLCGCA DGRAELVAHA AGVAAVGRKA LRVSEVATDK AVRVLRSVAR HAGTSAVVQE MAQAGVAAML CVVAQSEQFV AL

Best Arabidopsis Sequence Match ( AT2G35930.1 )
(BLAST)

001: MSGGIMDEEI EIPPFFLCPI SLEIMKDPVI VSTGITYDRD SIEKWLFAGK KNSCPVTKQD ITDADLTPNH TLRRLIQSWC TLNASYGVER IPTPRPPICK
101: SEIEKLIRDS ASSHENQVKC LKRLRQIVSE NATNKRCLEA AGVPEFLANI VSNDSENGSL TDEALNLLYH LETSETVLKN LLNNKKDNNI VKSLTKIMQR
201: GMYESRVYAT LLLKNILEVA DPMQSMTLKP EVFTEVVQIL DDRISQKATK AAMHILVNIC PWGRNRHKAV EAGVISVIIE LLMDESFTSE RRGPEMAMVV
301: LDLLCQCAEG RAEFLNHGAA IAVVCKKILR VSQTASDRAV RVLLSVGRFC ATPALLHEML QLGVVAKLCL VLQVSCGGKT KEKAKELLKL HARVWKDSPC
401: LPKNMILAYP C

Arabidopsis Description

PUB23E3 ubiquitin-protein ligase PUB23 [Source:UniProtKB/Swiss-Prot;Acc:Q84TG3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.