Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- endoplasmic reticulum 1
Predictors | GFP | MS/MS | Papers | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
HORVU2Hr1G123130.1 | Barley | cytosol | 10.54 | 97.83 |
TraesCSU01G036400.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 94.15 | 94.15 |
TraesCS2D01G594700.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 93.21 | 93.21 |
HORVU2Hr1G123050.1 | Barley | cytosol | 69.56 | 88.39 |
Os04t0686000-01 | Rice | cytosol | 63.0 | 65.13 |
EES13136 | Sorghum | cytosol | 63.23 | 63.38 |
Zm00001d001769_P001 | Maize | cytosol, endoplasmic reticulum, peroxisome | 53.4 | 58.16 |
TraesCS3B01G409400.1 | Wheat | cytosol | 45.43 | 46.52 |
GSMUA_Achr7P03220_001 | Banana | cytosol | 33.72 | 46.45 |
GSMUA_Achr5P01000_001 | Banana | cytosol | 37.47 | 45.07 |
PGSC0003DMT400055045 | Potato | cytosol | 21.78 | 44.08 |
Solyc01g007030.2.1 | Tomato | cytosol | 21.55 | 43.6 |
TraesCS6B01G421400.1 | Wheat | cytosol | 40.52 | 41.19 |
TraesCS6B01G420600.1 | Wheat | cytosol | 40.05 | 40.71 |
TraesCS6B01G421900.1 | Wheat | cytosol | 39.81 | 40.48 |
TraesCS2B01G314500.1 | Wheat | cytosol | 40.28 | 39.91 |
KRH22633 | Soybean | cytosol, nucleus | 37.47 | 39.7 |
VIT_08s0105g00180.t01 | Wine grape | cytosol, plastid, vacuole | 38.17 | 39.66 |
VIT_08s0105g00190.t01 | Wine grape | cytosol, plastid, vacuole | 37.7 | 39.17 |
KRH26691 | Soybean | cytosol | 34.89 | 38.5 |
KRH25324 | Soybean | cytosol | 31.38 | 36.91 |
PGSC0003DMT400054949 | Potato | cytosol | 34.89 | 36.7 |
Solyc01g007000.2.1 | Tomato | cytosol, nucleus, vacuole | 35.13 | 36.67 |
KRH32856 | Soybean | cytosol | 36.07 | 36.67 |
CDX84168 | Canola | cytosol | 34.66 | 36.45 |
PGSC0003DMT400055049 | Potato | cytosol, nucleus, plasma membrane | 33.96 | 35.71 |
Bra023044.1-P | Field mustard | cytosol | 34.19 | 35.7 |
CDX84587 | Canola | cytosol | 34.19 | 35.7 |
CDY32070 | Canola | cytosol | 34.43 | 35.68 |
KRH72176 | Soybean | cytosol | 34.89 | 35.65 |
Solyc11g068920.1.1 | Tomato | cytosol | 33.72 | 35.64 |
CDX78096 | Canola | cytosol | 32.32 | 35.48 |
CDX75084 | Canola | cytosol | 33.72 | 35.47 |
PGSC0003DMT400055050 | Potato | cytosol | 32.55 | 35.46 |
CDX95337 | Canola | cytosol | 33.96 | 35.45 |
Bra017278.1-P | Field mustard | cytosol | 34.19 | 35.44 |
CDY40422 | Canola | cytosol | 34.19 | 35.44 |
PGSC0003DMT400050493 | Potato | cytosol | 33.49 | 35.4 |
CDX79645 | Canola | cytosol | 33.72 | 35.29 |
Solyc01g007020.2.1 | Tomato | cytosol | 33.72 | 35.29 |
AT2G35930.1 | Thale cress | cytosol | 33.96 | 35.28 |
PGSC0003DMT400055051 | Potato | cytosol | 32.55 | 35.28 |
VIT_06s0009g00320.t01 | Wine grape | cytosol | 34.19 | 35.27 |
Solyc01g009330.1.1 | Tomato | cytosol | 35.13 | 35.21 |
Bra005309.1-P | Field mustard | cytosol | 31.85 | 35.14 |
CDY23218 | Canola | cytosol | 32.32 | 34.85 |
KRG96257 | Soybean | cytosol | 34.19 | 34.84 |
Solyc01g007010.2.1 | Tomato | cytosol | 33.26 | 34.8 |
KRH68014 | Soybean | cytosol | 34.19 | 34.76 |
KRG96268 | Soybean | cytosol | 33.96 | 34.61 |
CDY59599 | Canola | cytosol | 33.02 | 34.47 |
KRH35744 | Soybean | cytosol | 33.72 | 34.37 |
PGSC0003DMT400054947 | Potato | cytosol | 24.12 | 34.11 |
Bra012803.1-P | Field mustard | cytosol | 33.26 | 33.57 |
Bra033430.1-P | Field mustard | cytosol | 33.02 | 33.25 |
AT3G52450.1 | Thale cress | cytosol | 33.49 | 32.87 |
PGSC0003DMT400054948 | Potato | cytosol | 21.78 | 32.63 |
Bra006925.1-P | Field mustard | cytosol | 33.02 | 32.41 |
PGSC0003DMT400038197 | Potato | cytosol | 34.19 | 32.16 |
TraesCS6B01G209000.1 | Wheat | cytosol | 30.91 | 31.21 |
Solyc01g007040.2.1 | Tomato | cytosol, nucleus, vacuole | 12.41 | 29.61 |
TraesCS2B01G471900.1 | Wheat | cytosol | 27.87 | 28.47 |
TraesCS7B01G300000.1 | Wheat | cytosol, extracellular, nucleus | 24.82 | 27.6 |
TraesCS6B01G268300.1 | Wheat | extracellular | 25.76 | 27.03 |
TraesCS2B01G323600.1 | Wheat | cytosol | 25.29 | 27.0 |
TraesCS6B01G290700.1 | Wheat | cytosol | 27.17 | 26.91 |
TraesCS7B01G105600.1 | Wheat | mitochondrion | 26.7 | 25.56 |
GSMUA_Achr9P29630_001 | Banana | cytosol | 36.77 | 25.4 |
TraesCS2B01G315100.1 | Wheat | cytosol | 26.23 | 25.4 |
TraesCS6B01G342800.1 | Wheat | mitochondrion | 25.06 | 23.57 |
TraesCS4B01G228700.1 | Wheat | mitochondrion | 23.89 | 23.18 |
TraesCS1B01G284200.1 | Wheat | mitochondrion | 22.95 | 21.63 |
TraesCS4B01G236200.1 | Wheat | cytosol | 23.18 | 21.57 |
Protein Annotations
Gene3D:3.30.40.10 | MapMan:35.1 | InterPro:ARM-type_fold | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 |
GO:GO:0005488 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016567 |
GO:GO:0016740 | GO:GO:0019538 | InterPro:IPR003613 | InterPro:IPR013083 | PFAM:PF04564 | PFscan:PS51698 |
PANTHER:PTHR22849 | PANTHER:PTHR22849:SF11 | SMART:SM00504 | SUPFAM:SSF48371 | SUPFAM:SSF57850 | EnsemblPlantsGene:TraesCS2B01G601300 |
EnsemblPlants:TraesCS2B01G601300.1 | InterPro:Ubox_domain | InterPro:Znf_RING/FYVE/PHD | TIGR:cd16664 | SEG:seg | : |
Description
No Description!
Coordinates
chr2B:+:784268420..784269703
Molecular Weight (calculated)
44914.3 Da
IEP (calculated)
8.502
GRAVY (calculated)
0.154
Length
427 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEVEVPSYF VCPITLDVMR DPVTLPTSIT YDRHAIHRWL RLAASCPLTK LPVLPDCEPT PNHTLSRLIR SWCALHRPDD AVDRTMNSAP ADRARLAALV
101: SRLADAKNKG PAREALAALR ELRDVAAEGE RGRELIAAVP GSADALLEVF VASATCAPDY AAAALDVISS LRLPERCLAR AVDRDGAALV GALVSTLQGH
201: SGSDADAASR ARAAVLLADV TACMAPSRAA SLPEQVFVEA VRLLRGDDGM GASTAMATKA ALRVLAGATA HGRNRVKAAE AGAVAALVDL LLLVNGERRR
301: AWCELALCAL NRLCGCAEGR AALVAHGAGV AAVGAWVAGA SMAASAKAVR VLRSIARHAA TVAVVQEMAA TGAVGKLCLV AASAPEEGRQ WCDERTRKRA
401: RETLRLHARA WRSSPCLHPT LQALYPC
101: SRLADAKNKG PAREALAALR ELRDVAAEGE RGRELIAAVP GSADALLEVF VASATCAPDY AAAALDVISS LRLPERCLAR AVDRDGAALV GALVSTLQGH
201: SGSDADAASR ARAAVLLADV TACMAPSRAA SLPEQVFVEA VRLLRGDDGM GASTAMATKA ALRVLAGATA HGRNRVKAAE AGAVAALVDL LLLVNGERRR
301: AWCELALCAL NRLCGCAEGR AALVAHGAGV AAVGAWVAGA SMAASAKAVR VLRSIARHAA TVAVVQEMAA TGAVGKLCLV AASAPEEGRQ WCDERTRKRA
401: RETLRLHARA WRSSPCLHPT LQALYPC
001: MSGGIMDEEI EIPPFFLCPI SLEIMKDPVI VSTGITYDRD SIEKWLFAGK KNSCPVTKQD ITDADLTPNH TLRRLIQSWC TLNASYGVER IPTPRPPICK
101: SEIEKLIRDS ASSHENQVKC LKRLRQIVSE NATNKRCLEA AGVPEFLANI VSNDSENGSL TDEALNLLYH LETSETVLKN LLNNKKDNNI VKSLTKIMQR
201: GMYESRVYAT LLLKNILEVA DPMQSMTLKP EVFTEVVQIL DDRISQKATK AAMHILVNIC PWGRNRHKAV EAGVISVIIE LLMDESFTSE RRGPEMAMVV
301: LDLLCQCAEG RAEFLNHGAA IAVVCKKILR VSQTASDRAV RVLLSVGRFC ATPALLHEML QLGVVAKLCL VLQVSCGGKT KEKAKELLKL HARVWKDSPC
401: LPKNMILAYP C
101: SEIEKLIRDS ASSHENQVKC LKRLRQIVSE NATNKRCLEA AGVPEFLANI VSNDSENGSL TDEALNLLYH LETSETVLKN LLNNKKDNNI VKSLTKIMQR
201: GMYESRVYAT LLLKNILEVA DPMQSMTLKP EVFTEVVQIL DDRISQKATK AAMHILVNIC PWGRNRHKAV EAGVISVIIE LLMDESFTSE RRGPEMAMVV
301: LDLLCQCAEG RAEFLNHGAA IAVVCKKILR VSQTASDRAV RVLLSVGRFC ATPALLHEML QLGVVAKLCL VLQVSCGGKT KEKAKELLKL HARVWKDSPC
401: LPKNMILAYP C
Arabidopsis Description
PUB23E3 ubiquitin-protein ligase PUB23 [Source:UniProtKB/Swiss-Prot;Acc:Q84TG3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.