Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
Predictors | GFP | MS/MS | Papers | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS7A01G177700.1 | Wheat | cytosol, plastid | 75.22 | 80.09 |
TraesCS7A01G177500.1 | Wheat | cytosol, plastid | 75.22 | 80.09 |
TraesCS7D01G179100.1 | Wheat | plastid | 72.61 | 77.67 |
TraesCS7A01G177600.1 | Wheat | plastid | 71.3 | 76.28 |
TraesCS7A01G236700.1 | Wheat | plastid | 69.57 | 75.47 |
TraesCS7A01G232500.1 | Wheat | plastid | 64.78 | 72.33 |
HORVU7Hr1G036500.7 | Barley | plastid | 60.87 | 68.63 |
HORVU7Hr1G036470.3 | Barley | cytosol, nucleus | 62.61 | 59.5 |
HORVU7Hr1G036540.3 | Barley | mitochondrion, nucleus, plastid | 64.78 | 57.75 |
HORVU7Hr1G036570.2 | Barley | cytosol | 55.22 | 57.47 |
TraesCS5B01G123900.1 | Wheat | plastid | 39.57 | 38.08 |
TraesCS6A01G316200.1 | Wheat | mitochondrion | 35.22 | 37.67 |
KRH39841 | Soybean | mitochondrion | 23.48 | 36.73 |
Zm00001d044874_P001 | Maize | cytosol, plastid | 31.74 | 35.1 |
EER89430 | Sorghum | plastid | 34.35 | 34.8 |
OQU76071 | Sorghum | plastid | 30.43 | 34.65 |
KRH23958 | Soybean | mitochondrion | 30.87 | 33.49 |
Solyc08g078700.2.1 | Tomato | plastid | 30.43 | 33.33 |
PGSC0003DMT400012249 | Potato | mitochondrion | 30.43 | 33.18 |
VIT_02s0154g00480.t01 | Wine grape | mitochondrion, plastid | 28.7 | 32.84 |
VIT_02s0154g00490.t01 | Wine grape | mitochondrion | 28.7 | 32.84 |
AT4G25200.1 | Thale cress | mitochondrion | 29.57 | 32.38 |
OQU75612 | Sorghum | plastid | 31.3 | 32.29 |
OQU75930 | Sorghum | plastid | 31.3 | 32.29 |
EER89431 | Sorghum | plastid | 30.0 | 31.8 |
VIT_16s0022g00510.t01 | Wine grape | mitochondrion | 28.7 | 31.73 |
AT5G51440.1 | Thale cress | mitochondrion | 28.26 | 30.95 |
CDY38862 | Canola | mitochondrion | 26.09 | 30.61 |
Bra013872.1-P | Field mustard | mitochondrion | 28.26 | 30.52 |
CDX89437 | Canola | mitochondrion | 28.26 | 30.52 |
Bra029174.1-P | Field mustard | mitochondrion | 26.09 | 30.46 |
CDY00476 | Canola | mitochondrion | 20.87 | 29.81 |
CDY03368 | Canola | mitochondrion | 27.39 | 29.58 |
GSMUA_Achr10P... | Banana | mitochondrion | 27.39 | 29.17 |
CDY32630 | Canola | mitochondrion | 20.87 | 28.24 |
CDX99920 | Canola | mitochondrion | 19.13 | 27.5 |
Bra028253.1-P | Field mustard | mitochondrion | 18.26 | 26.09 |
KXG19616 | Sorghum | plastid | 29.57 | 25.28 |
Os06t0219500-00 | Rice | mitochondrion | 31.74 | 23.62 |
Solyc08g078710.1.1 | Tomato | mitochondrion | 15.65 | 18.37 |
PGSC0003DMT400012247 | Potato | mitochondrion | 15.22 | 17.95 |
PGSC0003DMT400012246 | Potato | plastid | 11.3 | 15.29 |
Solyc08g078720.2.1 | Tomato | mitochondrion | 10.87 | 14.88 |
Protein Annotations
Gene3D:2.60.40.790 | Gene3D:3.30.730.10 | MapMan:35.1 | InterPro:A-crystallin/Hsp20_dom | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf |
InterPro:DNA-bd_dom_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
InterPro:HSP20 | InterPro:HSP20-like_chaperone | InterPro:IPR001471 | InterPro:IPR002068 | InterPro:IPR008978 | InterPro:IPR036955 |
PFAM:PF00011 | PFscan:PS51032 | PANTHER:PTHR11527 | PANTHER:PTHR11527:SF176 | SUPFAM:SSF49764 | SUPFAM:SSF54171 |
EnsemblPlantsGene:TraesCS7A01G177800 | EnsemblPlants:TraesCS7A01G177800.1 | TIGR:cd06464 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr7A:-:131185243..131187430
Molecular Weight (calculated)
25184.5 Da
IEP (calculated)
4.724
GRAVY (calculated)
-0.411
Length
230 amino acids
Sequence
(BLAST)
(BLAST)
001: MASAVDCKGK EIAPASLLKS GTPVAYCSVD SPAVTTARRP YNTQAKEVSH YDDDDDDYNA RDLVTPSFFS QDVLDPLGAL TSMARLLSLM EDVATETGGL
101: SSTAGAGASR LGQWVAKEDD DAVYLKVSMP GLTKEHVEDG DDDSAVPRYN RRIQVPAADA YKMDKIKAEM KNGLLWVTLL KVKEEERKDV FHVKRRSGAF
201: SSEIWFHEKR LILGTFDTPE EVAPAHDAVA
101: SSTAGAGASR LGQWVAKEDD DAVYLKVSMP GLTKEHVEDG DDDSAVPRYN RRIQVPAADA YKMDKIKAEM KNGLLWVTLL KVKEEERKDV FHVKRRSGAF
201: SSEIWFHEKR LILGTFDTPE EVAPAHDAVA
001: MASALALKRL LSSSIAPRSR SVLRPAVSSR LFNTNAVRSY DDDGENGDGV DLYRRSVPRR RGDFFSDVFD PFSPTRSVSQ VLNLMDQFME NPLLSATRGM
101: GASGARRGWD IKEKDDALYL RIDMPGLSRE DVKLALEQDT LVIRGEGKNE EDGGEEGESG NRRFTSRIGL PDKIYKIDEI KAEMKNGVLK VVIPKMKEQE
201: RNDVRQIEIN
101: GASGARRGWD IKEKDDALYL RIDMPGLSRE DVKLALEQDT LVIRGEGKNE EDGGEEGESG NRRFTSRIGL PDKIYKIDEI KAEMKNGVLK VVIPKMKEQE
201: RNDVRQIEIN
Arabidopsis Description
HSP23.6HSP23.6-MITO [Source:UniProtKB/TrEMBL;Acc:A0A178USN5]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.