Factsheet for TraesCS6A01G181700.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

mitochondrion 2
extracellular 1
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	extracellular, plastid
iPSORT:	mitochondrion
MultiLoc:	extracellular
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G178100.5
TraesCS4B01G138200.1
TraesCS4B01G326700.1
TraesCS4D01G132900.3
TraesCS4D01G323400.1
TraesCS5A01G498700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G52560.1	TraesCS4B01G326700.1	AT2G47450.1	21798944
AT1G52560.1	TraesCS4D01G323400.1	AT2G47450.1	21798944
AT1G52560.1	TraesCS5A01G498700.1	AT2G47450.1	21798944
AT1G52560.1	TraesCS4A01G178100.5	AT3G06430.1	21798944
AT1G52560.1	TraesCS4B01G138200.1	AT3G06430.1	21798944
AT1G52560.1	TraesCS4D01G132900.3	AT3G06430.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G169100.1	Wheat	cytosol	91.29	96.02
TraesCS6B01G210600.1	Wheat	mitochondrion	90.15	91.54
HORVU6Hr1G038320.1	Barley	mitochondrion	37.5	62.66
Zm00001d015777_P001	Maize	mitochondrion	50.0	62.56
EES06474	Sorghum	mitochondrion	49.24	59.63
Os02t0201000-02	Rice	mitochondrion	40.53	48.86
Solyc12g042830.1.1	Tomato	plastid	14.02	46.84
KRH47454	Soybean	cytosol	16.29	46.74
CDY66886	Canola	cytosol	26.52	36.65
Bra018972.1-P	Field mustard	cytosol	26.52	36.65
GSMUA_Achr9P28520_001	Banana	mitochondrion	28.03	32.31
CDY40150	Canola	mitochondrion	27.65	31.47
KRH44453	Soybean	mitochondrion	26.52	31.11
VIT_09s0002g06790.t01	Wine grape	mitochondrion	26.89	30.47
AT1G52560.1	Thale cress	mitochondrion	25.76	29.31
PGSC0003DMT400073689	Potato	mitochondrion	25.0	28.82
TraesCS4A01G068200.1	Wheat	mitochondrion	24.24	26.89
TraesCS4A01G068300.1	Wheat	plastid	23.48	25.94
TraesCS5A01G257700.1	Wheat	plastid	21.97	23.29
CDY66885	Canola	mitochondrion	1.14	12.5

Protein Annotations

EnsemblPlants:TraesCS6A01G181700.1	EnsemblPlantsGene:TraesCS6A01G181700	Gene3D:2.60.40.790	GO:GO:0006950	GO:GO:0008150	GO:GO:0009408
GO:GO:0009628	InterPro:A-crystallin/Hsp20_dom	InterPro:HSP20	InterPro:HSP20-like_chaperone	InterPro:IPR002068	InterPro:IPR008978
PANTHER:PTHR11527	PANTHER:PTHR11527:SF173	PFAM:PF00011	PFscan:PS01031	SEG:seg	SignalP:SignalP-noTM
SUPFAM:SSF49764	TIGR:cd06464	MapMan:19.1.8.9	:	:	:

Description

No Description!

Coordinates

chr6A:+:208383858..208384740

Molecular Weight (calculated)

28855.1 Da

IEP (calculated)

7.574

GRAVY (calculated)

-0.341

Length

264 amino acids

Sequence
(BLAST)

001: MHLLASLVCC RFIMQPVSVC SSRATKEQSD EEHTATHRAE FVTGHMALAR LCLKKALAGR AAAMARPASA SSHGGMDLRS LFSSAAADSA ATRAPLEGET
101: NRREVAVADR SSSATAPGGR WPWRDLRDFA PFRLVNGLGS ALSHVAETLS RPLERWRPLF GKVREDEERY RLRFEVPGLG KDDVRVTVED GALVIRGEKR
201: VEDEHGGDGE WWSTSSYGCY HASLLLPEDA RVDGIAAEVK DGVLYVTVPR VPGSQRSVTE VKVQ

Best Arabidopsis Sequence Match ( AT1G52560.2 )
(BLAST)

001: MALARLALRN LQQKLSPSLM GQSCERGLVG NRHNPMKLNR FMATSAGEQE DKMNTEVSVS EKKSPRQNFP RRRGRKSLWR NTDDHGYFTP TLNGNTLIQA
101: TENMNRIFDN FNVNPFQLMG QVKEQDDCYK LRYEVPGLTK EDVKITVNDG ILTIKGDHKA EEEKGSPEED EYWSSKSYGY YNTSLSLPDD AKVEDIKAEL
201: KNGVLNLVIP RTEKPKKNVQ EISVE

Arabidopsis Description

HSP26.526.5 kDa heat shock protein, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SSQ8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.