Factsheet for Solyc12g042830.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
extracellular: 22892874
plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 22892874 doi

EH Konozy, H Rogniaux, M Causse, M Faurobert

Unité de Génétique et Amélioration des Fruits et Légumes, INRA, BP 94, 84143 Montfavet, France. ehkonozy@yahoo.com

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g057200.2.1
Solyc02g087400.1.1
Solyc12g098990.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G52560.1	Solyc02g087400.1.1	AT2G47450.1	21798944
AT1G52560.1	Solyc01g057200.2.1	AT3G06430.1	21798944
AT1G52560.1	Solyc12g098990.1.1	AT3G06430.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH47454	Soybean	cytosol	64.56	55.43
PGSC0003DMT400073689	Potato	mitochondrion	84.81	29.26
Bra018972.1-P	Field mustard	cytosol	64.56	26.7
AT1G52560.1	Thale cress	mitochondrion	62.03	21.12
VIT_09s0002g06790.t01	Wine grape	mitochondrion	62.03	21.03
KRH44453	Soybean	mitochondrion	58.23	20.44
Zm00001d015777_P001	Maize	mitochondrion	44.3	16.59
GSMUA_Achr9P28520_001	Banana	mitochondrion	44.3	15.28
TraesCS6D01G169100.1	Wheat	cytosol	48.1	15.14
Solyc05g014280.2.1	Tomato	plastid	41.77	14.93
EES06474	Sorghum	mitochondrion	40.51	14.68
TraesCS6B01G210600.1	Wheat	mitochondrion	46.84	14.23
Solyc03g082420.2.1	Tomato	plastid	41.77	14.04
TraesCS6A01G181700.1	Wheat	plastid	46.84	14.02
Os02t0201000-02	Rice	mitochondrion	36.71	13.24
HORVU6Hr1G038320.1	Barley	mitochondrion	2.53	1.27
CDY66885	Canola	mitochondrion	0.0	0.0

Protein Annotations

EnsemblPlants:Solyc12g042830.1.1	EnsemblPlantsGene:Solyc12g042830.1	Gene3D:2.60.40.790	InterPro:A-crystallin/Hsp20_dom	InterPro:HSP20	InterPro:HSP20-like_chaperone
InterPro:IPR002068	InterPro:IPR008978	PANTHER:PTHR11527	PANTHER:PTHR11527:SF173	PFAM:PF00011	PFscan:PS01031
SEG:seg	SUPFAM:SSF49764	UniParc:UPI000276942D	UniProt:K4DF72	MapMan:35.1	:

Description

No Description!

Coordinates

chr12:+:39616918..39617157

Molecular Weight (calculated)

8961.5 Da

IEP (calculated)

4.270

GRAVY (calculated)

-0.806

Length

79 amino acids

Sequence
(BLAST)

1: MVEDGILTIK GEHKQEKEEE GSDDEFWSST SYGYYNNSIV LPQDAKVDEI KAEMKDGVLT ITIPKSDKPK KDVKEIEVL

Best Arabidopsis Sequence Match ( AT1G52560.2 )
(BLAST)

001: MALARLALRN LQQKLSPSLM GQSCERGLVG NRHNPMKLNR FMATSAGEQE DKMNTEVSVS EKKSPRQNFP RRRGRKSLWR NTDDHGYFTP TLNGNTLIQA
101: TENMNRIFDN FNVNPFQLMG QVKEQDDCYK LRYEVPGLTK EDVKITVNDG ILTIKGDHKA EEEKGSPEED EYWSSKSYGY YNTSLSLPDD AKVEDIKAEL
201: KNGVLNLVIP RTEKPKKNVQ EISVE

Arabidopsis Description

HSP26.526.5 kDa heat shock protein, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SSQ8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.