Factsheet for Solyc03g082420.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400008351	Potato	plastid	77.45	78.11
KRH64320	Soybean	plastid	58.3	59.31
VIT_16s0098g01060.t01	Wine grape	plastid	55.74	57.71
KRH53604	Soybean	plastid	56.6	57.58
AT4G27670.1	Thale cress	plastid	51.91	53.74
Bra026317.1-P	Field mustard	plastid	51.06	53.57
CDY19036	Canola	plastid	51.06	53.57
CDY30235	Canola	plastid	50.64	53.12
CDY55343	Canola	plastid	50.64	53.12
TraesCS4A01G068200.1	Wheat	mitochondrion	48.51	47.9
TraesCS4A01G068300.1	Wheat	plastid	48.51	47.7
GSMUA_Achr2P12540_001	Banana	plastid	47.66	47.66
EER95179	Sorghum	plastid	49.36	47.54
Zm00001d028408_P001	Maize	plastid	48.09	47.08
TraesCS4D01G226000.1	Wheat	mitochondrion	47.23	46.64
TraesCS4B01G225400.1	Wheat	plastid	48.09	46.5
Os03t0245800-02	Rice	plastid	47.23	46.25
Solyc12g042830.1.1	Tomato	plastid	14.04	41.77
GSMUA_Achr4P28560_001	Banana	plastid	38.3	37.82
HORVU4Hr1G063350.1	Barley	mitochondrion	47.23	36.51
Solyc05g014280.2.1	Tomato	plastid	31.06	33.03
Os03t0835700-00	Rice	plastid	19.15	24.19

Protein Annotations

MapMan:19.1.8.11	Gene3D:2.60.40.790	InterPro:A-crystallin/Hsp20_dom	GO:GO:0000427	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139
GO:GO:0006355	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009408
GO:GO:0009416	GO:GO:0009507	GO:GO:0009536	GO:GO:0009628	GO:GO:0009644	GO:GO:0009658
GO:GO:0009987	GO:GO:0016043	GO:GO:0042542	GO:GO:0042644	GO:GO:0043621	GO:GO:0101031
InterPro:HSP20	InterPro:HSP20-like_chaperone	InterPro:IPR002068	InterPro:IPR008978	PFAM:PF00011	PFscan:PS01031
PANTHER:PTHR11527	PANTHER:PTHR11527:SF167	UniProt:Q95661	SUPFAM:SSF49764	EnsemblPlantsGene:Solyc03g082420.2	EnsemblPlants:Solyc03g082420.2.1
EMBL:U66300	UniParc:UPI000012CC16	:	:	:	:

Description

HSP21Small heat shock protein, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q95661]

Coordinates

chr3:-:52352239..52353325

Molecular Weight (calculated)

26228.2 Da

IEP (calculated)

8.468

GRAVY (calculated)

-0.653

Length

235 amino acids

Sequence
(BLAST)

001: MAYTSLTSSP LVSNVSVGGT SKINNNKVSA PCSVFVPSMR RPTTRLVARA TGDNKDTSVD VHHSSAQGGN NQGTAVERRP TRMALDVSPF GVLDPMSPMR
101: TMRQMIDTMD RLFEDTMTFP GRNRASGTGE IRTPWDIHDD ENEIKMRFDM PGLSKEDVKV SVENDMLVIK GEHKKEEDGR DKHSWGRNYS SYDTRLSLPD
201: NVVKDKIKAE LKNGVLFISI PKTEVEKKVI DVQIN

Best Arabidopsis Sequence Match ( AT4G27670.1 )
(BLAST)

001: MASTLSFAAS ALCSPLAPSP SVSSKSATPF SVSFPRKIPS RIRAQDQREN SIDVVQQGQQ KGNQGSSVEK RPQQRLTMDV SPFGLLDPLS PMRTMRQMLD
101: TMDRMFEDTM PVSGRNRGGS GVSEIRAPWD IKEEEHEIKM RFDMPGLSKE DVKISVEDNV LVIKGEQKKE DSDDSWSGRS VSSYGTRLQL PDNCEKDKIK
201: AELKNGVLFI TIPKTKVERK VIDVQIQ

Arabidopsis Description

HSP21HSP21 [Source:UniProtKB/TrEMBL;Acc:A0A178UVU5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.