Factsheet for Os03t0245800-02

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 27992503

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d028408_P001	Maize	plastid	71.67	71.67
EER95179	Sorghum	plastid	72.5	71.31
TraesCS4D01G226000.1	Wheat	mitochondrion	69.17	69.75
TraesCS4A01G068300.1	Wheat	plastid	69.17	69.46
TraesCS4B01G225400.1	Wheat	plastid	69.58	68.72
TraesCS4A01G068200.1	Wheat	mitochondrion	67.08	67.65
HORVU4Hr1G063350.1	Barley	mitochondrion	70.0	55.26
KRH53604	Soybean	plastid	47.5	49.35
GSMUA_Achr2P12540_001	Banana	plastid	47.08	48.09
KRH64320	Soybean	plastid	45.83	47.62
Solyc03g082420.2.1	Tomato	plastid	46.25	47.23
PGSC0003DMT400008351	Potato	plastid	45.83	47.21
AT4G27670.1	Thale cress	plastid	43.75	46.26
VIT_16s0098g01060.t01	Wine grape	plastid	43.75	46.26
CDY55343	Canola	plastid	42.92	45.98
CDY30235	Canola	plastid	42.92	45.98
CDY19036	Canola	plastid	42.92	45.98
Bra026317.1-P	Field mustard	plastid	42.5	45.54
GSMUA_Achr4P28560_001	Banana	plastid	39.17	39.5
Os03t0835700-00	Rice	plastid	21.67	27.96
Os02t0201000-02	Rice	mitochondrion	22.08	24.2

Protein Annotations

MapMan:19.1.8.11	Gene3D:2.60.40.790	EntrezGene:4332237	InterPro:A-crystallin/Hsp20_dom	EMBL:AB020973	ProteinID:ABF94943.1
EMBL:AK063618	EMBL:AK120045	EMBL:AK120048	ProteinID:BAF11455.1	ProteinID:BAS83241.1	ProteinID:EEE58686.1
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006950	GO:GO:0008150
GO:GO:0009408	GO:GO:0009507	GO:GO:0009536	GO:GO:0009628	InterPro:HSP20	InterPro:HSP20-like_chaperone
InterPro:IPR002068	InterPro:IPR008978	EnsemblPlantsGene:Os03g0245800	EnsemblPlants:Os03t0245800-02	PFAM:PF00011	PFscan:PS01031
PANTHER:PTHR11527	PANTHER:PTHR11527:SF167	UniProt:Q10P60	SUPFAM:SSF49764	UniParc:UPI0000DB417E	RefSeq:XP_015628759.1
SEG:seg	:	:	:	:	:

Description

26 KDA HEAT SHOCK PROTEINSimilar to Heat shock protein 26. (Os03t0245800-02)

Coordinates

chr3:+:7697015..7698027

Molecular Weight (calculated)

26665.9 Da

IEP (calculated)

7.528

GRAVY (calculated)

-0.541

Length

240 amino acids

Sequence
(BLAST)

001: MAAPFALVSR VSPAARLPIR AAWRRARPTV GLPSSGRARQ LAVASAAQEN RDNTAVDVHV NQDGGNQQGN AVQRRPRRSS ALDGISPFGL VDPMSPMRTM
101: RQMLDTMDRI FDDVALGFPA TPRRSLATGE VRMPWDVMED DKEVRMRFDM PGLSREEVKV MVEDDALVIR GEHKKEEGEG AEGSGDGWWK ERSVSSYDMR
201: LALPDECDKS KVRAELKNGV LLVTVPKTEV ERKVIDVQVQ

Best Arabidopsis Sequence Match ( AT4G27670.1 )
(BLAST)

001: MASTLSFAAS ALCSPLAPSP SVSSKSATPF SVSFPRKIPS RIRAQDQREN SIDVVQQGQQ KGNQGSSVEK RPQQRLTMDV SPFGLLDPLS PMRTMRQMLD
101: TMDRMFEDTM PVSGRNRGGS GVSEIRAPWD IKEEEHEIKM RFDMPGLSKE DVKISVEDNV LVIKGEQKKE DSDDSWSGRS VSSYGTRLQL PDNCEKDKIK
201: AELKNGVLFI TIPKTKVERK VIDVQIQ

Arabidopsis Description

HSP21HSP21 [Source:UniProtKB/TrEMBL;Acc:A0A178UVU5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.