CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d028408_P001	Maize	plastid	83.61	85.0
TraesCS4A01G068200.1	Wheat	mitochondrion	77.46	79.41
TraesCS4A01G068300.1	Wheat	plastid	76.64	78.24
TraesCS4D01G226000.1	Wheat	mitochondrion	76.23	78.15
TraesCS4B01G225400.1	Wheat	plastid	77.46	77.78
Os03t0245800-02	Rice	plastid	71.31	72.5
HORVU4Hr1G063350.1	Barley	mitochondrion	77.87	62.5
KRH64320	Soybean	plastid	48.77	51.52
VIT_16s0098g01060.t01	Wine grape	plastid	47.13	50.66
KRH53604	Soybean	plastid	47.95	50.65
PGSC0003DMT400008351	Potato	plastid	47.54	49.79
CDY30235	Canola	plastid	45.49	49.55
CDY55343	Canola	plastid	45.49	49.55
Solyc03g082420.2.1	Tomato	plastid	47.54	49.36
CDY19036	Canola	plastid	45.08	49.11
Bra026317.1-P	Field mustard	plastid	44.67	48.66
GSMUA_Achr2P12540_001	Banana	plastid	46.31	48.09
AT4G27670.1	Thale cress	plastid	44.26	47.58
GSMUA_Achr4P28560_001	Banana	plastid	38.93	39.92
KXG25677	Sorghum	plastid	31.15	28.25
EES06474	Sorghum	mitochondrion	24.59	27.52
Os03t0835700-00	Rice	plastid	19.26	25.27

Protein Annotations

MapMan:19.1.8.11	Gene3D:2.60.40.790	EntrezGene:8054347	InterPro:A-crystallin/Hsp20_dom	UniProt:C5WQZ1	EnsemblPlants:EER95179
ProteinID:EER95179	ProteinID:EER95179.1	GO:GO:0000427	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006355
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009408	GO:GO:0009416
GO:GO:0009536	GO:GO:0009628	GO:GO:0009644	GO:GO:0009658	GO:GO:0009987	GO:GO:0016043
GO:GO:0042542	GO:GO:0042644	GO:GO:0043621	GO:GO:0101031	InterPro:HSP20	InterPro:HSP20-like_chaperone
InterPro:IPR002068	InterPro:IPR008978	PFAM:PF00011	PFscan:PS01031	PANTHER:PTHR11527	PANTHER:PTHR11527:SF167
EnsemblPlantsGene:SORBI_3001G438000	SUPFAM:SSF49764	unigene:Sbi.13093	UniParc:UPI0001A8323D	RefSeq:XP_002468181.1	SEG:seg

Description

hypothetical protein

Coordinates

chr1:-:71623555..71624809

Molecular Weight (calculated)

26868.0 Da

IEP (calculated)

7.526

GRAVY (calculated)

-0.541

Length

244 amino acids

Sequence
(BLAST)

001: MAAAPFTIAS RLSPAARLPV RAWRAARPAH GFASAGRARS LAVASAAQEN GDNSVDVQVS QNGGNGNRQQ QGNAVQRRPR RAAPLDISPF GLVDPMSPMR
101: TMRQMLDTMD RLFDDAVGFP MATRRSPTAA TGEVRLPWDI VEDDKEVKMR FDMPGLARDE VKVMVEDDTL VIRGEHKKEE GADETAEGGD GWWKQRSVSS
201: YDMRLALPDE CDKSKVRAEL KNGVLLVTVP KTEVERKVID VQVQ

Best Arabidopsis Sequence Match ( AT4G27670.1 )
(BLAST)

001: MASTLSFAAS ALCSPLAPSP SVSSKSATPF SVSFPRKIPS RIRAQDQREN SIDVVQQGQQ KGNQGSSVEK RPQQRLTMDV SPFGLLDPLS PMRTMRQMLD
101: TMDRMFEDTM PVSGRNRGGS GVSEIRAPWD IKEEEHEIKM RFDMPGLSKE DVKISVEDNV LVIKGEQKKE DSDDSWSGRS VSSYGTRLQL PDNCEKDKIK
201: AELKNGVLFI TIPKTKVERK VIDVQIQ

Arabidopsis Description

HSP21HSP21 [Source:UniProtKB/TrEMBL;Acc:A0A178UVU5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.