CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 2
vacuole 1
mitochondrion 6
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	secretory
EpiLoc:	endoplasmic reticulum
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Plant-mPloc:	plastid
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
EER97871
OQU93303

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G52560.1	OQU93303	AT2G47450.1	21798944
AT1G52560.1	EER97871	AT3G06430.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d015777_P001	Maize	mitochondrion	77.06	79.62
TraesCS6D01G169100.1	Wheat	cytosol	59.63	51.79
TraesCS6B01G210600.1	Wheat	mitochondrion	61.01	51.15
TraesCS6A01G181700.1	Wheat	plastid	59.63	49.24
HORVU6Hr1G038320.1	Barley	mitochondrion	34.86	48.1
KRH47454	Soybean	cytosol	20.18	47.83
Os02t0201000-02	Rice	mitochondrion	45.41	45.21
Solyc12g042830.1.1	Tomato	plastid	14.68	40.51
GSMUA_Achr9P28520_001	Banana	mitochondrion	38.99	37.12
CDY66886	Canola	cytosol	32.11	36.65
Bra018972.1-P	Field mustard	cytosol	32.11	36.65
KRH44453	Soybean	mitochondrion	36.7	35.56
CDY40150	Canola	mitochondrion	36.24	34.05
VIT_09s0002g06790.t01	Wine grape	mitochondrion	34.86	32.62
AT1G52560.1	Thale cress	mitochondrion	33.95	31.9
PGSC0003DMT400073689	Potato	mitochondrion	32.57	31.0
EER95179	Sorghum	plastid	27.52	24.59
KXG25677	Sorghum	plastid	26.15	21.19
CDY66885	Canola	mitochondrion	1.83	16.67

Protein Annotations

Gene3D:2.60.40.790	MapMan:35.1	EntrezGene:8071650	InterPro:A-crystallin/Hsp20_dom	UniProt:C5XXL0	EnsemblPlants:EES06474
ProteinID:EES06474	ProteinID:EES06474.1	GO:GO:0006950	GO:GO:0008150	GO:GO:0009408	GO:GO:0009628
GO:GO:0009644	GO:GO:0042542	InterPro:HSP20	InterPro:HSP20-like_chaperone	InterPro:IPR002068	InterPro:IPR008978
PFAM:PF00011	PFscan:PS01031	PANTHER:PTHR11527	PANTHER:PTHR11527:SF173	EnsemblPlantsGene:SORBI_3004G083600	SUPFAM:SSF49764
UniParc:UPI0001A85C70	RefSeq:XP_002453498.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:6897645..6898706

Molecular Weight (calculated)

23713.1 Da

IEP (calculated)

8.464

GRAVY (calculated)

-0.332

Length

218 amino acids

Sequence
(BLAST)

001: MALARLCLNR ALAVAAGRAQ ALARPAYAVA PETDLKLRAL LSTSAADSAA SGEASRREVA VSEERSAPAR RGGRWAWRDL RDFTPFRLVD GLGSALSQVA
101: ETLSRPLERL APSRLLSGKV REDEARYRLR FEVPGLGKDD VRVAVEDGVL VIEGEKREHG EEVGGEWWSA ATGYHASLLL PDDARADGIT AEVKDGVLYV
201: TVPRTGERRR NVTEVKVQ

Best Arabidopsis Sequence Match ( AT1G52560.1 )
(BLAST)

001: MALARLALRN LQQKLSPSLM GQSCERGLVG NRHNPMKLNR FMATSAGEQE DKMNTEVSVS EKKSPRQNFP RRRGRKSLWR NTDDHGYFTP TLNEFFPPTI
101: GNTLIQATEN MNRIFDNFNV NPFQLMGQVK EQDDCYKLRY EVPGLTKEDV KITVNDGILT IKGDHKAEEE KGSPEEDEYW SSKSYGYYNT SLSLPDDAKV
201: EDIKAELKNG VLNLVIPRTE KPKKNVQEIS VE

Arabidopsis Description

HSP26.526.5 kDa heat shock protein, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SSQ8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.