CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
mitochondrion 3
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES01544
EES04254
EES14786
EES16662
EES19782
KXG27759
KXG31875
KXG34125
KXG37972
KXG37974
OQU78843
OQU81762
OQU84317
OQU93303

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G47450.1	EES01544	AT1G15310.1	20828566
AT2G47450.1	EES19782	AT1G15310.1	20828566
AT2G47450.1	KXG34125	AT1G15310.1	20828566
AT2G47450.1	KXG37972	AT1G15310.1	20828566
AT2G47450.1	KXG37974	AT1G15310.1	20828566
AT2G47450.1	OQU78843	AT1G34430.1	21798944
AT2G47450.1	EES14786	AT2G18710.1	14517205
AT2G47450.1	KXG31875	AT2G28800.1	14517205
AT2G47450.1	KXG31875	AT2G28800.1	20828566
AT2G47450.1	EES04254	AT2G45770.1	14517205
AT2G47450.1	EES04254	AT2G45770.1	20828566
AT2G47450.1	OQU93303	AT2G47450.1	10480939
AT2G47450.1	OQU93303	AT2G47450.1	11306572
AT2G47450.1	OQU84317	AT4G10930.1	21798944
AT2G47450.1	EES16662	AT5G03940.1	10480939
AT2G47450.1	KXG27759	AT5G03940.1	10480939
AT2G47450.1	EES16662	AT5G03940.1	11306572
AT2G47450.1	KXG27759	AT5G03940.1	11306572
AT2G47450.1	EES16662	AT5G03940.1	14517205
AT2G47450.1	KXG27759	AT5G03940.1	14517205
AT2G47450.1	EES16662	AT5G03940.1	15292240
AT2G47450.1	KXG27759	AT5G03940.1	15292240
AT2G47450.1	EES16662	AT5G03940.1	15632183
AT2G47450.1	KXG27759	AT5G03940.1	15632183
AT2G47450.1	EES16662	AT5G03940.1	16678173
AT2G47450.1	KXG27759	AT5G03940.1	16678173
AT2G47450.1	OQU81762	AT5G56250.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d027518_P001	Maize	plastid	92.91	92.67
Os03t0131900-01	Rice	plastid	82.68	81.19
TraesCS4D01G323400.1	Wheat	plastid	78.48	76.28
TraesCS5A01G498700.1	Wheat	mitochondrion	78.22	76.21
TraesCS4B01G326700.1	Wheat	plastid	77.17	74.81
KRG92072	Soybean	cytosol	14.7	51.38
VIT_03s0038g03560.t01	Wine grape	plastid	49.61	50.67
AT2G47450.1	Thale cress	plastid	49.08	50.13
KRH29099	Soybean	plastid	49.87	49.74
CDX77337	Canola	plastid	49.61	49.74
Bra014106.1-P	Field mustard	plastid	49.34	49.47
Solyc02g087400.1.1	Tomato	cytosol, mitochondrion	47.77	49.46
CDY70592	Canola	plastid	49.08	49.21
PGSC0003DMT400003274	Potato	plastid	47.77	48.92

Protein Annotations

Gene3D:1.25.40.20	Gene3D:2.40.50.40	MapMan:23.1.7.3.1	UniProt:A0A1Z5SBJ8	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom
InterPro:Ankyrin_rpt-contain_sf	InterPro:CPSRP43	InterPro:Chromo-like_dom_sf	InterPro:Chromo/chromo_shadow_dom	InterPro:Chromo_domain	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006810	GO:GO:0008150	GO:GO:0009416	GO:GO:0009507	GO:GO:0009535	GO:GO:0009536
GO:GO:0009579	GO:GO:0009628	GO:GO:0009644	GO:GO:0009941	GO:GO:0009987	GO:GO:0016020
GO:GO:0016043	GO:GO:0019904	GO:GO:0030674	GO:GO:0032991	GO:GO:0042802	GO:GO:0043234
GO:GO:0045038	GO:GO:0070208	GO:GO:0080085	GO:GO:0097718	InterPro:IPR000953	InterPro:IPR002110
InterPro:IPR020683	InterPro:IPR036770	EnsemblPlants:OQU93303	ProteinID:OQU93303	ProteinID:OQU93303.1	PFAM:PF00385
PFAM:PF13857	PFscan:PS50013	PFscan:PS50088	PFscan:PS50297	PANTHER:PTHR24128	PANTHER:PTHR24128:SF11
SMART:SM00248	SMART:SM00298	EnsemblPlantsGene:SORBI_3001G516800	SUPFAM:SSF48403	SUPFAM:SSF54160	UniParc:UPI00026630BB
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:78339552..78341623

Molecular Weight (calculated)

41312.0 Da

IEP (calculated)

4.380

GRAVY (calculated)

-0.459

Length

381 amino acids

Sequence
(BLAST)

001: MEAVLRHPSL SRLKPPNPNL PRTPSPSLPP PSLLRLRARR LIAAAVFQDQ KPKEPASKGG DDEEAYGEVD RIVSSRTVSS PVFAEDGSAS AAVATEYLVE
101: WKDGHEPSWV PKEAIAADVV AEYETPWWTA AKKADAEALA ALLADETLRR DPDAEDAQGR TAAHFAAGLG SEECLRALAA AGADLGHRER AGGGLTPLHI
201: AVGYGRAGAV RALLELGADP EAPDGQGRTP LELVQEVLAR TPKGNPAAFQ LRQGLEAAQK ELEKAVYEWA EVEKVIDGRG EGKWREYLVE WRDGGEREWV
301: KAAWVAEDLV SDFEAGLEYA VAEAVVDKRQ VATATAEGEN RWEYLVKWVD IEEATWEPAE NVDAELVQEF ELRQSGSAGG D

Best Arabidopsis Sequence Match ( AT2G47450.1 )
(BLAST)

001: MQKVFLAMDT CALVIHQSLS RIKLSPPKSS SSSSSAFSPE SLPIRRIELC FRGAICAAVQ RNYEETTSSV EEAEEDDESS SSYGEVNKII GSRTAGEGAM
101: EYLIEWKDGH SPSWVPSSYI AADVVSEYET PWWTAARKAD EQALSQLLED RDVDAVDENG RTALLFVAGL GSDKCVRLLA EAGADLDHRD MRGGLTALHM
201: AAGYVRPEVV EALVELGADI EVEDERGLTA LELAREILKT TPKGNPMQFG RRIGLEKVIN VLEGQVFEYA EVDEIVEKRG KGKDVEYLVR WKDGGDCEWV
301: KGVHVAEDVA KDYEDGLEYA VAESVIGKRV GDDGKTIEYL VKWTDMSDAT WEPQDNVDST LVLLYQQQQP MNE

Arabidopsis Description

CAOSignal recognition particle 43 kDa protein, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O22265]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.