CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91819
KRG92072
KRH09713
KRH23593
KRH24811
KRH29099
KRH29812
KRH34962
KRH38611
KRH41328
KRH44479
KRH47429
KRH48224
KRH54991
KRH60053
KRH63143
KRH65131
KRH67940

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G47450.1	KRH09713	AT1G15310.1	20828566
AT2G47450.1	KRH23593	AT1G15310.1	20828566
AT2G47450.1	KRH44479	AT1G15310.1	20828566
AT2G47450.1	KRH47429	AT1G15310.1	20828566
AT2G47450.1	KRG91819	AT1G34430.1	21798944
AT2G47450.1	KRH34962	AT1G34430.1	21798944
AT2G47450.1	KRH54991	AT2G18710.1	14517205
AT2G47450.1	KRH63143	AT2G18710.1	14517205
AT2G47450.1	KRH24811	AT2G28800.1	14517205
AT2G47450.1	KRH29812	AT2G28800.1	14517205
AT2G47450.1	KRH24811	AT2G28800.1	20828566
AT2G47450.1	KRH29812	AT2G28800.1	20828566
AT2G47450.1	KRH48224	AT2G45770.1	14517205
AT2G47450.1	KRH65131	AT2G45770.1	14517205
AT2G47450.1	KRH48224	AT2G45770.1	20828566
AT2G47450.1	KRH65131	AT2G45770.1	20828566
AT2G47450.1	KRG92072	AT2G47450.1	10480939
AT2G47450.1	KRH29099	AT2G47450.1	10480939
AT2G47450.1	KRG92072	AT2G47450.1	11306572
AT2G47450.1	KRH29099	AT2G47450.1	11306572
AT2G47450.1	KRH38611	AT4G10930.1	21798944
AT2G47450.1	KRH41328	AT4G10930.1	21798944
AT2G47450.1	KRH60053	AT4G10930.1	21798944
AT2G47450.1	KRH67940	AT5G03940.1	10480939
AT2G47450.1	KRH67940	AT5G03940.1	11306572
AT2G47450.1	KRH67940	AT5G03940.1	14517205
AT2G47450.1	KRH67940	AT5G03940.1	15292240
AT2G47450.1	KRH67940	AT5G03940.1	15632183
AT2G47450.1	KRH67940	AT5G03940.1	16678173

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG92072	Soybean	cytosol	23.3	81.65
Solyc02g087400.1.1	Tomato	cytosol, mitochondrion	59.69	61.96
PGSC0003DMT400003274	Potato	plastid	59.95	61.56
VIT_03s0038g03560.t01	Wine grape	plastid	59.42	60.86
AT2G47450.1	Thale cress	plastid	54.71	56.03
Bra014106.1-P	Field mustard	plastid	55.24	55.53
CDY70592	Canola	plastid	54.97	55.26
CDX77337	Canola	plastid	54.71	55.0
OQU93303	Sorghum	mitochondrion, plastid	49.74	49.87
Zm00001d027518_P001	Maize	plastid	49.21	49.21
TraesCS4D01G323400.1	Wheat	plastid	49.21	47.96
Os03t0131900-01	Rice	plastid	48.69	47.94
TraesCS4B01G326700.1	Wheat	plastid	49.21	47.84
TraesCS5A01G498700.1	Wheat	mitochondrion	48.43	47.31

Protein Annotations

Gene3D:1.25.40.20	EntrezGene:100818382	Gene3D:2.40.50.40	MapMan:23.1.7.3.1	EMBL:ACUP02006781	InterPro:Ankyrin_rpt
InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	InterPro:CPSRP43	InterPro:Chromo-like_dom_sf	InterPro:Chromo/chromo_shadow_dom	InterPro:Chromo_domain
EnsemblPlantsGene:GLYMA_11G097200	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0008150	GO:GO:0009416	GO:GO:0009507
GO:GO:0009536	GO:GO:0009628	GO:GO:0045038	GO:GO:0080085	UniProt:I1LIP2	InterPro:IPR000953
InterPro:IPR002110	InterPro:IPR020683	InterPro:IPR036770	EnsemblPlants:KRH29099	ProteinID:KRH29099	ProteinID:KRH29099.1
PFAM:PF00385	PFAM:PF13857	PFscan:PS50013	PFscan:PS50088	PFscan:PS50297	PANTHER:PTHR24128
PANTHER:PTHR24128:SF11	SMART:SM00248	SMART:SM00298	SUPFAM:SSF48403	SUPFAM:SSF54160	UniParc:UPI000233C6B1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr11:-:7421433..7423336

Molecular Weight (calculated)

41803.9 Da

IEP (calculated)

4.647

GRAVY (calculated)

-0.418

Length

382 amino acids

Sequence
(BLAST)

001: MEAIFATKPA SHSLLLTKLS PNPKHLFPPH QQSFHNIRHK PTRFRPVTAV FQNQHQQDAA AASNHTEDES YGEVKGIIGS RALEAATGME YLIEWNDGHA
101: PSWVPADFIA KDVVDEYETP WWTAAKKADE SALKNLTKSD DGRDVDAVDA DGRTALLFVA GLGSESCVKL LAEAGANLDH RDRSGGLAAL HMAAGYVRPG
201: VAKVLLDLGA DPEVADDRGR TALDLAREIL KVTPKGNPMQ FGRRIGLEGV IRVLEGAVFE YAEVQEILER RGKGENLEYL VRWKDGGANE WVKAKFVAED
301: LVKDYEAGLE YAVAEAVLAK RVADEGTPEF LVKWADLEEP TWEPEENVDP ELVKAFEGSN NQAQPSSNGP AVVFSNQDSP SL

Best Arabidopsis Sequence Match ( AT2G47450.1 )
(BLAST)

001: MQKVFLAMDT CALVIHQSLS RIKLSPPKSS SSSSSAFSPE SLPIRRIELC FRGAICAAVQ RNYEETTSSV EEAEEDDESS SSYGEVNKII GSRTAGEGAM
101: EYLIEWKDGH SPSWVPSSYI AADVVSEYET PWWTAARKAD EQALSQLLED RDVDAVDENG RTALLFVAGL GSDKCVRLLA EAGADLDHRD MRGGLTALHM
201: AAGYVRPEVV EALVELGADI EVEDERGLTA LELAREILKT TPKGNPMQFG RRIGLEKVIN VLEGQVFEYA EVDEIVEKRG KGKDVEYLVR WKDGGDCEWV
301: KGVHVAEDVA KDYEDGLEYA VAESVIGKRV GDDGKTIEYL VKWTDMSDAT WEPQDNVDST LVLLYQQQQP MNE

Arabidopsis Description

CAOSignal recognition particle 43 kDa protein, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O22265]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.