CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG92072
KRG93305
KRH24006
KRH24811
KRH27971
KRH29099
KRH29310
KRH29812
KRH56614
KRH67940
KRH77487

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G45770.1	KRH24811	AT2G28800.1	14517205
AT2G45770.1	KRH29812	AT2G28800.1	14517205
AT2G45770.1	KRG92072	AT2G47450.1	14517205
AT2G45770.1	KRH29099	AT2G47450.1	14517205
AT2G45770.1	KRG93305	AT3G27960.1	21798944
AT2G45770.1	KRH56614	AT3G27960.1	21798944
AT2G45770.1	KRH24006	AT3G48150.1	21798944
AT2G45770.1	KRH27971	AT3G48150.1	21798944
AT2G45770.1	KRH29310	AT3G48150.1	21798944
AT2G45770.1	KRH77487	AT3G48150.1	21798944
AT2G45770.1	KRH67940	AT5G03940.1	14517205

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH48224	Soybean	plastid	96.51	96.51
VIT_15s0048g02080.t01	Wine grape	plastid	81.72	82.83
PGSC0003DMT400071384	Potato	plastid	79.03	79.89
CDY18901	Canola	plastid	77.42	79.78
AT2G45770.1	Thale cress	plastid	78.23	79.51
Solyc01g091580.2.1	Tomato	plastid	78.49	79.35
CDY37064	Canola	plastid	78.23	79.08
CDX74765	Canola	plastid	77.96	78.8
Bra004937.1-P	Field mustard	plastid	77.69	78.53
CDY27360	Canola	plastid	77.42	78.47
TraesCS3B01G561300.1	Wheat	plastid	75.0	78.15
Bra039315.1-P	Field mustard	plastid	66.13	78.1
TraesCSU01G058200.1	Wheat	plastid	74.46	76.94
TraesCS3A01G498300.1	Wheat	plastid	74.19	76.88
GSMUA_Achr11P...	Banana	plastid	78.49	76.44
Os01t0958100-01	Rice	plastid	74.46	76.31
EES04254	Sorghum	plastid	73.12	74.32
HORVU3Hr1G110160.4	Barley	mitochondrion	74.73	69.67
Zm00001d042044_P001	Maize	plastid	72.85	63.17
KRH72313	Soybean	cytosol	17.47	21.1
KRH23593	Soybean	cytosol	22.31	16.6
KRH09713	Soybean	cytosol	22.04	16.43
KRH44479	Soybean	cytosol	21.77	16.36
KRH54944	Soybean	endoplasmic reticulum	27.15	16.21
KRH47429	Soybean	cytosol, endoplasmic reticulum, nucleus	21.51	16.16
KRH67940	Soybean	plastid	24.46	16.11
KRH03040	Soybean	endoplasmic reticulum	26.61	15.81

Protein Annotations

Gene3D:1.20.120.140	EntrezGene:100791073	MapMan:23.1.7.4	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	EMBL:ACUP02001314
EnsemblPlantsGene:GLYMA_03G015600	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0006614	GO:GO:0006810	GO:GO:0008150	UniProt:I1JKD2
ProteinID:KRH65130.1	EnsemblPlants:KRH65131	ProteinID:KRH65131	ProteinID:KRH65131.1	InterPro:P-loop_NTPase	PFAM:PF00448
PFAM:PF02881	ScanProsite:PS00300	PANTHER:PTHR43134	PANTHER:PTHR43134:SF2	SMART:SM00382	SMART:SM00962
SMART:SM00963	InterPro:SRP/SRP_N	InterPro:SRP54_GTPase_dom	InterPro:SR_rcpt_FtsY	SUPFAM:SSF47364	SUPFAM:SSF52540
InterPro:Signal_recog_particl_SRP54_hlx	TIGRFAMs:TIGR00064	UniParc:UPI000233A325	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr3:-:1539775..1548226

Molecular Weight (calculated)

40072.5 Da

IEP (calculated)

8.460

GRAVY (calculated)

0.024

Length

372 amino acids

Sequence
(BLAST)

001: MATTSASFAR FSVISRPSSS NPQFILFNAA PRTGTPHSRT GSARFRCLAG QTGFFTKLGR LIKEKAKSDV EKLFSGFSKT RSNLAVIDEL LLYWNLADTD
101: RVLDELEEAL LVSDFGPRIT IKIVENLRED IFSGKLKSGN EIKEALKRNV LELLTSKGSK TELQLGYRKP AVIMIVGVNG GGKTTSLGKL AYRLKNEGAK
201: ILMAAGDTFR AAASDQLEIW AERTGCEIVV AESEKAKASS VLSQAVKKGK ELGFDIVLCD TSGRLHTNYS LMEELISCKK SVAKVVPGAP NEILLVLDGT
301: TGLNMLPQAR EFNDVVGVTG LVLTKLDGSA RGGCVVSVVD ELGIPVKFVG VGEGVEDLQP FDAEAFVNAI FM

Best Arabidopsis Sequence Match ( AT2G45770.1 )
(BLAST)

001: MATSSAHLSF LAGRISPFSS ERIGLFPLRG EFRPRMTRFR CSAGPSGFFT RLGRLIKEKA KSDVEKVFSG FSKTRENLAV IDELLLFWNL AETDRVLDEL
101: EEALLVSDFG PKITVRIVER LREDIMSGKL KSGSEIKDAL KESVLEMLAK KNSKTELQLG FRKPAVIMIV GVNGGGKTTS LGKLAHRLKN EGTKVLMAAG
201: DTFRAAASDQ LEIWAERTGC EIVVAEGDKA KAATVLSKAV KRGKEEGYDV VLCDTSGRLH TNYSLMEELI ACKKAVGKIV SGAPNEILLV LDGNTGLNML
301: PQAREFNEVV GITGLILTKL DGSARGGCVV SVVEELGIPV KFIGVGEAVE DLQPFDPEAF VNAIFS

Arabidopsis Description

CPFTSYCell division protein FtsY homolog, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O80842]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.