Factsheet for VIT_15s0048g02080.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_03s0038g03560.t01
VIT_06s0004g04460.t01
VIT_07s0031g02330.t01
VIT_07s0130g00490.t01
VIT_08s0007g03160.t01
VIT_14s0066g01280.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G45770.1	VIT_06s0004g04460.t01	AT2G28800.1	14517205
AT2G45770.1	VIT_03s0038g03560.t01	AT2G47450.1	14517205
AT2G45770.1	VIT_14s0066g01280.t01	AT3G27960.1	21798944
AT2G45770.1	VIT_07s0031g02330.t01	AT3G48150.1	21798944
AT2G45770.1	VIT_07s0130g00490.t01	AT3G48150.1	21798944
AT2G45770.1	VIT_08s0007g03160.t01	AT5G03940.1	14517205

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY18901	Canola	plastid	82.29	83.66
CDX74765	Canola	plastid	82.56	82.34
Bra004937.1-P	Field mustard	plastid	82.29	82.07
KRH65131	Soybean	plastid	82.83	81.72
PGSC0003DMT400071384	Potato	plastid	81.74	81.52
KRH48224	Soybean	plastid	82.56	81.45
Solyc01g091580.2.1	Tomato	plastid	81.2	80.98
CDY37064	Canola	plastid	80.65	80.43
AT2G45770.1	Thale cress	plastid	80.11	80.33
CDY27360	Canola	plastid	80.11	80.11
Bra039315.1-P	Field mustard	plastid	67.57	78.73
GSMUA_Achr11P...	Banana	plastid	79.84	76.7
TraesCS3B01G561300.1	Wheat	plastid	73.57	75.63
TraesCSU01G058200.1	Wheat	plastid	73.57	75.0
TraesCS3A01G498300.1	Wheat	plastid	73.3	74.93
Os01t0958100-01	Rice	plastid	71.39	72.18
EES04254	Sorghum	plastid	71.66	71.86
HORVU3Hr1G110160.4	Barley	mitochondrion	73.84	67.92
Zm00001d042044_P001	Maize	plastid	71.12	60.84
VIT_09s0002g07290.t01	Wine grape	cytosol	22.89	16.97
VIT_11s0037g00300.t01	Wine grape	endoplasmic reticulum	27.79	16.56
VIT_08s0007g03160.t01	Wine grape	plastid	25.34	16.4

Protein Annotations

Gene3D:1.20.120.140	EntrezGene:100267692	wikigene:100267692	MapMan:23.1.7.4	Gene3D:3.40.50.300	InterPro:AAA+_ATPase
ProteinID:CBI38758	ProteinID:CBI38758.3	UniProt:D7U7H9	EMBL:FN596739	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006614
GO:GO:0006810	GO:GO:0008150	EntrezGene:LOC100267692	wikigene:LOC100267692	InterPro:P-loop_NTPase	PFAM:PF00448
PFAM:PF02881	ScanProsite:PS00300	PANTHER:PTHR43134	PANTHER:PTHR43134:SF2	SMART:SM00382	SMART:SM00962
SMART:SM00963	InterPro:SRP/SRP_N	InterPro:SRP54_GTPase_dom	InterPro:SR_rcpt_FtsY	SUPFAM:SSF47364	SUPFAM:SSF52540
InterPro:Signal_recog_particl_SRP54_hlx	TIGRFAMs:TIGR00064	UniParc:UPI00015CAAFD	ArrayExpress:VIT_15s0048g02080	EnsemblPlantsGene:VIT_15s0048g02080	EnsemblPlants:VIT_15s0048g02080.t01
unigene:Vvi.12274	RefSeq:XP_002269433	RefSeq:XP_002269433.1	RefSeq:XP_010661556.1	SEG:seg	:

Description

No Description!

Coordinates

chr15:+:16202300..16209673

Molecular Weight (calculated)

39305.8 Da

IEP (calculated)

8.705

GRAVY (calculated)

0.053

Length

367 amino acids

Sequence
(BLAST)

001: MASPSPFVRS LSASPTPPSL FAFNLPRTRF APKPPSAPRF TCQAGQTGFF TRLGRLIKEK TKSDVEKLFS GFSKTRDNLA VIDELLLYWN LADTDRVLDE
101: LEEALLVSDF GPRITIKIVE SLRDDILAGK LKSGSEIKDA LKKSVLDLLT KKGSKTALQL GFRKPAVVII VGVNGGGKTT SLGKLAYKLK KEGAKVLMAA
201: GDTFRAAASD QLEIWAERTG CEIVVAEGEK AKASSVLSQA VKRGKEQGFD IVLCDTSGRL HTNYSLMEEL IACKKAVGKV VSGAPNEILL VLDGTTGLNM
301: LPQAREFNEV VGISGLILTK LDGSARGGCV VSVVDELGIP VKFVGVGEGV EDLQPFDAEV FVNAIFS

Best Arabidopsis Sequence Match ( AT2G45770.1 )
(BLAST)

001: MATSSAHLSF LAGRISPFSS ERIGLFPLRG EFRPRMTRFR CSAGPSGFFT RLGRLIKEKA KSDVEKVFSG FSKTRENLAV IDELLLFWNL AETDRVLDEL
101: EEALLVSDFG PKITVRIVER LREDIMSGKL KSGSEIKDAL KESVLEMLAK KNSKTELQLG FRKPAVIMIV GVNGGGKTTS LGKLAHRLKN EGTKVLMAAG
201: DTFRAAASDQ LEIWAERTGC EIVVAEGDKA KAATVLSKAV KRGKEEGYDV VLCDTSGRLH TNYSLMEELI ACKKAVGKIV SGAPNEILLV LDGNTGLNML
301: PQAREFNEVV GITGLILTKL DGSARGGCVV SVVEELGIPV KFIGVGEAVE DLQPFDPEAF VNAIFS

Arabidopsis Description

CPFTSYCell division protein FtsY homolog, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O80842]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.