CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70273
CDX77209
CDX77337
CDX77598
CDX86457
CDX98195
CDY04905
CDY11716
CDY14165
CDY14166
CDY31733
CDY36901
CDY41424
CDY44976
CDY58069
CDY58070
CDY58518
CDY62667
CDY70352
CDY70592
CDY70805

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G45770.1	CDX77598	AT2G25650.1	21798944
AT2G45770.1	CDX98195	AT2G25650.1	21798944
AT2G45770.1	CDY11716	AT2G25650.1	21798944
AT2G45770.1	CDY62667	AT2G25650.1	21798944
AT2G45770.1	CDY70352	AT2G25650.1	21798944
AT2G45770.1	CDX77209	AT2G28800.1	14517205
AT2G45770.1	CDY31733	AT2G28800.1	14517205
AT2G45770.1	CDX77337	AT2G47450.1	14517205
AT2G45770.1	CDY70592	AT2G47450.1	14517205
AT2G45770.1	CDX86457	AT3G27960.1	21798944
AT2G45770.1	CDY58518	AT3G27960.1	21798944
AT2G45770.1	CDY36901	AT3G48150.1	21798944
AT2G45770.1	CDY44976	AT3G48150.1	21798944
AT2G45770.1	CDY58069	AT3G48150.1	21798944
AT2G45770.1	CDY58070	AT3G48150.1	21798944
AT2G45770.1	CDY70805	AT3G48150.1	21798944
AT2G45770.1	CDX70273	AT5G03940.1	14517205
AT2G45770.1	CDY04905	AT5G03940.1	14517205
AT2G45770.1	CDY14165	AT5G03940.1	14517205
AT2G45770.1	CDY14166	AT5G03940.1	14517205
AT2G45770.1	CDY41424	AT5G03940.1	14517205

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra039315.1-P	Field mustard	plastid	83.38	97.14
CDY37064	Canola	plastid	97.28	97.01
CDY18901	Canola	plastid	91.55	93.07
CDX74765	Canola	plastid	92.64	92.39
AT2G45770.1	Thale cress	plastid	92.1	92.35
VIT_15s0048g02080.t01	Wine grape	plastid	80.11	80.11
KRH65131	Soybean	plastid	78.47	77.42
KRH48224	Soybean	plastid	78.2	77.15
PGSC0003DMT400071384	Potato	plastid	75.48	75.27
Solyc01g091580.2.1	Tomato	plastid	74.93	74.73
TraesCSU01G058200.1	Wheat	plastid	72.75	74.17
TraesCS3B01G561300.1	Wheat	plastid	71.93	73.95
TraesCS3A01G498300.1	Wheat	plastid	72.21	73.82
GSMUA_Achr11P...	Banana	plastid	76.29	73.3
Os01t0958100-01	Rice	plastid	70.84	71.63
EES04254	Sorghum	plastid	70.84	71.04
HORVU3Hr1G110160.4	Barley	mitochondrion	72.75	66.92
Zm00001d042044_P001	Maize	plastid	70.3	60.14
CDY10656	Canola	cytosol	9.81	18.37
CDY36546	Canola	cytosol	23.16	17.75
CDY39632	Canola	cytosol	22.89	17.5
CDY04905	Canola	plastid	26.43	17.2
CDY41424	Canola	plastid	26.16	16.99
CDX70273	Canola	plastid	26.16	16.96
CDY14166	Canola	plastid	25.89	16.84
CDX93702	Canola	cytosol	22.34	16.57
CDY40616	Canola	cytosol	22.34	16.57
CDX77276	Canola	cytosol	22.34	16.53
CDY16472	Canola	cytosol	17.44	16.33
CDY39221	Canola	cytosol, endoplasmic reticulum	26.7	15.94
CDX72255	Canola	cytosol, endoplasmic reticulum	26.43	15.75
CDY28196	Canola	endoplasmic reticulum	25.89	15.27
CDY46694	Canola	cytosol	12.81	15.16
CDX68673	Canola	extracellular	25.89	15.13
CDY17067	Canola	cytosol, nucleus	13.08	14.86
CDY14165	Canola	plastid	7.9	12.89

Protein Annotations

Gene3D:1.20.120.140	MapMan:23.1.7.4	Gene3D:3.40.50.300	GO:A0A078GL91	UniProt:A0A078GL91	InterPro:AAA+_ATPase
EnsemblPlants:CDY27360	ProteinID:CDY27360	ProteinID:CDY27360.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006614	GO:GO:0006810
GO:GO:0008150	EnsemblPlantsGene:GSBRNA2T00037297001	InterPro:P-loop_NTPase	PFAM:PF00448	PFAM:PF02881	ScanProsite:PS00300
PANTHER:PTHR43134	PANTHER:PTHR43134:SF2	SMART:SM00382	SMART:SM00962	SMART:SM00963	InterPro:SRP/SRP_N
InterPro:SRP54_GTPase_dom	InterPro:SR_rcpt_FtsY	SUPFAM:SSF47364	SUPFAM:SSF52540	InterPro:Signal_recog_particl_SRP54_hlx	TIGRFAMs:TIGR00064
UniParc:UPI0004EE9402	SEG:seg	:	:	:	:

Description

BnaC04g50450DBnaC04g50450D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GL91]

Coordinates

chrLK032203:-:238567..240981

Molecular Weight (calculated)

39791.4 Da

IEP (calculated)

8.206

GRAVY (calculated)

-0.014

Length

367 amino acids

Sequence
(BLAST)

001: MSSSPTHLSF LAGRLSPPFS SERVGLRPQR VEFRIPKSRF SCSAGQSGFF TRLGRLIKEK AKSDVEKVFS GFSKTRENLA VIDELLLFWN LAETDRVLDE
101: LEEALLVSDF GPKITVRIVE RLRDDIMSGK LKSGTEIKEA LKQSVLEMLA KKNSKTELQM GFRKPAVIMI VGVNGGGKTT SLGKLAHRLK NEGTKVLMAA
201: GDTFRAAASD QLEIWAERTG CDIVVAEGEK AKAATVLTKA VKRGKEEGYD IVLCDTSGRL HTNFSLMEEL IACKKAVGKV VSGAPNEILL VLDGNTGLNM
301: LPQAREFNEI VGITGLILTK LDGSARGGCV VSVVEELGIP VKFIGVGEAV EDLQPFDAEA FVNAIFS

Best Arabidopsis Sequence Match ( AT2G45770.1 )
(BLAST)

001: MATSSAHLSF LAGRISPFSS ERIGLFPLRG EFRPRMTRFR CSAGPSGFFT RLGRLIKEKA KSDVEKVFSG FSKTRENLAV IDELLLFWNL AETDRVLDEL
101: EEALLVSDFG PKITVRIVER LREDIMSGKL KSGSEIKDAL KESVLEMLAK KNSKTELQLG FRKPAVIMIV GVNGGGKTTS LGKLAHRLKN EGTKVLMAAG
201: DTFRAAASDQ LEIWAERTGC EIVVAEGDKA KAATVLSKAV KRGKEEGYDV VLCDTSGRLH TNYSLMEELI ACKKAVGKIV SGAPNEILLV LDGNTGLNML
301: PQAREFNEVV GITGLILTKL DGSARGGCVV SVVEELGIPV KFIGVGEAVE DLQPFDPEAF VNAIFS

Arabidopsis Description

CPFTSYCell division protein FtsY homolog, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O80842]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.