Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- cytosol 1
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY70592 | Canola | plastid | 98.16 | 98.16 |
| AT2G47450.1 | Thale cress | plastid | 72.63 | 73.99 |
| KRG92072 | Soybean | cytosol | 17.63 | 61.47 |
| VIT_03s0038g03560.t01 | Wine grape | plastid | 55.53 | 56.57 |
| Solyc02g087400.1.1 | Tomato | cytosol, mitochondrion | 53.68 | 55.43 |
| KRH29099 | Soybean | plastid | 55.0 | 54.71 |
| PGSC0003DMT400003274 | Potato | plastid | 52.89 | 54.03 |
| OQU93303 | Sorghum | mitochondrion, plastid | 49.74 | 49.61 |
| Zm00001d027518_P001 | Maize | plastid | 49.21 | 48.95 |
| Os03t0131900-01 | Rice | plastid | 48.68 | 47.68 |
| TraesCS5A01G498700.1 | Wheat | mitochondrion | 48.42 | 47.06 |
| TraesCS4D01G323400.1 | Wheat | plastid | 47.89 | 46.43 |
| TraesCS4B01G326700.1 | Wheat | plastid | 47.89 | 46.31 |
Protein Annotations
| Gene3D:1.25.40.20 | Gene3D:2.40.50.40 | MapMan:23.1.7.3.1 | GO:A0A078CKS2 | InterPro:Ankyrin_rpt | InterPro:Ankyrin_rpt-contain_dom |
| InterPro:Ankyrin_rpt-contain_sf | EnsemblPlants:CDX77337 | ProteinID:CDX77337 | ProteinID:CDX77337.1 | InterPro:CPSRP43 | InterPro:Chromo-like_dom_sf |
| InterPro:Chromo/chromo_shadow_dom | InterPro:Chromo_domain | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0009416 |
| GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009628 | GO:GO:0045038 | GO:GO:0080085 | EnsemblPlantsGene:GSBRNA2T00128117001 |
| InterPro:IPR000953 | InterPro:IPR002110 | InterPro:IPR020683 | InterPro:IPR036770 | PFAM:PF00385 | PFAM:PF13857 |
| PFscan:PS50013 | PFscan:PS50088 | PFscan:PS50297 | PANTHER:PTHR24128 | PANTHER:PTHR24128:SF11 | SMART:SM00248 |
| SMART:SM00298 | SUPFAM:SSF48403 | SUPFAM:SSF54160 | UniParc:UPI0004EEB740 | SEG:seg | : |
Description
BnaC08g03820D
Coordinates
chrLK031810:-:1681698..1683081
Molecular Weight (calculated)
42230.4 Da
IEP (calculated)
4.287
GRAVY (calculated)
-0.415
Length
380 amino acids
Sequence
(BLAST)
(BLAST)
001: MDTSSLVINH HQSLSRIIKL PHVPKSYAFS SFQSFQTRQL LNKQLSFRAI SPAAVQRDNY ETASFVEDDD ESYGEVNRII GSRMAAGGGG AAMEYLIEWK
101: DGHSPSWVPS SYIAADVVSE YETPWWTAAR KADDQALAQL LEPSEGRRDA NTVDENGRTA LLFVAGLGSD KCVRLLSEAG ADLDHRDIRG GLTALHMAAG
201: YVQPDAVAAL VELGADAEVE DERGLTPLEL AREILKTTPK GNPMQFGRRI GLEKVISILE DQVFEYAEVE EILEKRGRGK DVEYLVKWKD GGDCDWVKGV
301: HVAEDVVKDY EAGLEYAVAE RVMGKRMGDD GNTEYLVKWT DMADATWEPE ENVDISLVQL YEQEEEAQPV NELELGIIKE
101: DGHSPSWVPS SYIAADVVSE YETPWWTAAR KADDQALAQL LEPSEGRRDA NTVDENGRTA LLFVAGLGSD KCVRLLSEAG ADLDHRDIRG GLTALHMAAG
201: YVQPDAVAAL VELGADAEVE DERGLTPLEL AREILKTTPK GNPMQFGRRI GLEKVISILE DQVFEYAEVE EILEKRGRGK DVEYLVKWKD GGDCDWVKGV
301: HVAEDVVKDY EAGLEYAVAE RVMGKRMGDD GNTEYLVKWT DMADATWEPE ENVDISLVQL YEQEEEAQPV NELELGIIKE
001: MQKVFLAMDT CALVIHQSLS RIKLSPPKSS SSSSSAFSPE SLPIRRIELC FRGAICAAVQ RNYEETTSSV EEAEEDDESS SSYGEVNKII GSRTAGEGAM
101: EYLIEWKDGH SPSWVPSSYI AADVVSEYET PWWTAARKAD EQALSQLLED RDVDAVDENG RTALLFVAGL GSDKCVRLLA EAGADLDHRD MRGGLTALHM
201: AAGYVRPEVV EALVELGADI EVEDERGLTA LELAREILKT TPKGNPMQFG RRIGLEKVIN VLEGQVFEYA EVDEIVEKRG KGKDVEYLVR WKDGGDCEWV
301: KGVHVAEDVA KDYEDGLEYA VAESVIGKRV GDDGKTIEYL VKWTDMSDAT WEPQDNVDST LVLLYQQQQP MNE
101: EYLIEWKDGH SPSWVPSSYI AADVVSEYET PWWTAARKAD EQALSQLLED RDVDAVDENG RTALLFVAGL GSDKCVRLLA EAGADLDHRD MRGGLTALHM
201: AAGYVRPEVV EALVELGADI EVEDERGLTA LELAREILKT TPKGNPMQFG RRIGLEKVIN VLEGQVFEYA EVDEIVEKRG KGKDVEYLVR WKDGGDCEWV
301: KGVHVAEDVA KDYEDGLEYA VAESVIGKRV GDDGKTIEYL VKWTDMSDAT WEPQDNVDST LVLLYQQQQP MNE
Arabidopsis Description
CAOSignal recognition particle 43 kDa protein, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O22265]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.