Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra000729.1-P | Field mustard | nucleus | 95.9 | 92.91 |
| CDY05126 | Canola | nucleus | 90.41 | 90.96 |
| AT4G10930.1 | Thale cress | nucleus | 66.09 | 64.07 |
| KRH38611 | Soybean | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 6.02 | 56.56 |
| Solyc12g055910.1.1 | Tomato | nucleus | 39.06 | 36.6 |
| VIT_02s0025g01650.t01 | Wine grape | nucleus | 40.8 | 36.51 |
| KRH41328 | Soybean | nucleus | 40.63 | 36.01 |
| KRH60053 | Soybean | nucleus | 40.28 | 35.35 |
| Os12t0209700-01 | Rice | nucleus | 15.08 | 30.78 |
| GSMUA_Achr3P31620_001 | Banana | nucleus | 34.44 | 29.65 |
| TraesCS3D01G287700.1 | Wheat | nucleus | 31.91 | 28.57 |
| TraesCS3A01G287900.3 | Wheat | nucleus | 32.17 | 28.19 |
| OQU84317 | Sorghum | nucleus | 30.69 | 28.11 |
| TraesCS3B01G322600.5 | Wheat | mitochondrion | 31.73 | 27.55 |
| Zm00001d053989_P003 | Maize | plastid | 30.17 | 26.37 |
| CDY14653 | Canola | nucleus | 6.54 | 11.36 |
| CDY27748 | Canola | cytosol | 3.49 | 11.2 |
| CDY05191 | Canola | nucleus | 6.45 | 9.1 |
| CDX74135 | Canola | nucleus | 6.54 | 8.72 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | GO:A0A078DUA6 | EnsemblPlants:CDX90783 | ProteinID:CDX90783 | ProteinID:CDX90783.1 |
| ncoils:Coil | InterPro:EloA-BP1 | EnsemblPlantsGene:GSBRNA2T00151481001 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:IPR019787 |
| PFAM:PF00628 | PFAM:PF13639 | PFAM:PF15870 | ScanProsite:PS00518 | PFscan:PS50016 | PFscan:PS50089 |
| PANTHER:PTHR22937 | PANTHER:PTHR22937:SF76 | SMART:SM00184 | SMART:SM00249 | SUPFAM:SSF57850 | SUPFAM:SSF57903 |
| UniParc:UPI0004EDC0BB | InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD | InterPro:Znf_PHD-finger | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD |
| InterPro:Znf_RING_CS | SEG:seg | : | : | : | : |
Description
BnaA03g24630D
Coordinates
chrLK031864:+:500966..506733
Molecular Weight (calculated)
126147.0 Da
IEP (calculated)
4.869
GRAVY (calculated)
-0.624
Length
1147 amino acids
Sequence
(BLAST)
(BLAST)
0001: MELDFDAGNL LEDEAGEVGH NDMAGFEGER CGICMDIIVD RGLLDCCQHW FCFECIDNWS SIMNLCPLCQ REFQLITCVP VNDFGESSKV DDVSLSGDED
0101: WCAEEETDAL SSPSHYIDEN AVICLDGDLC KIRNTFNYIG GDSNLDTSIA CDSCDTWYHA ICVGFDLEIA SEDTWVCPRC LSSEKPLESD ASPKETTKPL
0201: EIPESTNSGC SVEAIYSGNF SVTVADDGET ALVVSTVKGD EWPMKPSDTN ASLVQAMVYG DPNNSGRKEN TEQVPGKSEL MQSLPHQLSS ELLLESNQPL
0301: FAAQMEIRTD SQYALSLVAS GRDIFAFSAT VEPVIGLEEK ECLPVNVEKS LSSTAFSNSD VASVVSLKRK HSDCSGNDDN SKIKAEIAER LVKPKLEEME
0401: EKAAFRHESR SPSNNTTVDI FSIVKGFGSK KKPTLPNTTD KSSEGENAVG LRVKKIKKTP EDDKESLVLV EKLRKEIREA VRNKSMEDIR KDQFDPKLLA
0501: AFRAAVAGSK TDEAPRKIPA VALKAKKLML QKGKVRENLT KKIYADTNGK RKSAWHRDCE VEFWKHRCMK AGKPEKIETL KSVLSLLKKN PADTEKNVSF
0601: EAPQASNPIL SRLYLADTSV FPRNHDIKPL VGSKETGLDK TLPKSSDVKG NNSNAAGSKI NSGSKPPIFE NPDELKKDKR KWALQVLARK KALAGSNSSE
0701: DKEGSPELKG NYPLLAQLPA DMRPNLATSR HNKVPVTVRQ AQLYRLTEHL LKKENLLEVR RSAATELAVA DAINIEKVIA DKSSSKVVYL NLCSQEILHH
0801: SESKAMDSNA VEPSTSPPLS NNGIEHVDDK DSNDLAVLQA LRAAGLVDSP PNSPNRSSEV PPDKEDSSFD KAREAVGPDN VLDIGSVPDT DIFGDFEYEL
0901: DDEDYIGATK ATKAAETQQD EGLTKVKVVL STVQPEKVLN QSEVLGNEET TINQEGTTNG EEDGKSFVPM EPVPEAEAEA EGEGEGEKLV EKPLTEGSAD
1001: NGLQAKAPDS ECESNTHREF MASNFEKTSI QEKKLPTRIP NCNPSEKPSK EEKSKADGFS DSIIKKVEAY IKEHIRPLCK SGVINVDQYR WAVTKTREKV
1101: MKYHSKAKSA NFLIKEGDKI KKLAEQYVET AASSSTGAHH KEKDKCK
0101: WCAEEETDAL SSPSHYIDEN AVICLDGDLC KIRNTFNYIG GDSNLDTSIA CDSCDTWYHA ICVGFDLEIA SEDTWVCPRC LSSEKPLESD ASPKETTKPL
0201: EIPESTNSGC SVEAIYSGNF SVTVADDGET ALVVSTVKGD EWPMKPSDTN ASLVQAMVYG DPNNSGRKEN TEQVPGKSEL MQSLPHQLSS ELLLESNQPL
0301: FAAQMEIRTD SQYALSLVAS GRDIFAFSAT VEPVIGLEEK ECLPVNVEKS LSSTAFSNSD VASVVSLKRK HSDCSGNDDN SKIKAEIAER LVKPKLEEME
0401: EKAAFRHESR SPSNNTTVDI FSIVKGFGSK KKPTLPNTTD KSSEGENAVG LRVKKIKKTP EDDKESLVLV EKLRKEIREA VRNKSMEDIR KDQFDPKLLA
0501: AFRAAVAGSK TDEAPRKIPA VALKAKKLML QKGKVRENLT KKIYADTNGK RKSAWHRDCE VEFWKHRCMK AGKPEKIETL KSVLSLLKKN PADTEKNVSF
0601: EAPQASNPIL SRLYLADTSV FPRNHDIKPL VGSKETGLDK TLPKSSDVKG NNSNAAGSKI NSGSKPPIFE NPDELKKDKR KWALQVLARK KALAGSNSSE
0701: DKEGSPELKG NYPLLAQLPA DMRPNLATSR HNKVPVTVRQ AQLYRLTEHL LKKENLLEVR RSAATELAVA DAINIEKVIA DKSSSKVVYL NLCSQEILHH
0801: SESKAMDSNA VEPSTSPPLS NNGIEHVDDK DSNDLAVLQA LRAAGLVDSP PNSPNRSSEV PPDKEDSSFD KAREAVGPDN VLDIGSVPDT DIFGDFEYEL
0901: DDEDYIGATK ATKAAETQQD EGLTKVKVVL STVQPEKVLN QSEVLGNEET TINQEGTTNG EEDGKSFVPM EPVPEAEAEA EGEGEGEKLV EKPLTEGSAD
1001: NGLQAKAPDS ECESNTHREF MASNFEKTSI QEKKLPTRIP NCNPSEKPSK EEKSKADGFS DSIIKKVEAY IKEHIRPLCK SGVINVDQYR WAVTKTREKV
1101: MKYHSKAKSA NFLIKEGDKI KKLAEQYVET AASSSTGAHH KEKDKCK
0001: MELDFDASNL VEDEAVEVEH NGMTEIEGER CGICMDIIID RGVLDCCQHW FCFECIDNWS TIMNLCPLCQ REFQLITCVP VFDSGESSKV DEDLVSGDED
0101: CCIEEETDVV SSPSHYIDDT HYIDENAVVC LDGDLCKIRN TFSYIEGDSN LDTSIACDSC DMWYHAICVG FDVENASEDT WVCPRCLSNE KPHEPDTSPM
0201: ETQPDTSLME TRKSLDISEK TNSGCSVEAV YSGNFSVTVA DDGETALVVS IVKGDESHMG PSDTNPLPVQ AKMDGDPDSS HLKILCREEN TEQVAVKSEL
0301: NQSLPHDISS RLSSDSDQPF FAADIENRAD PVVEKDCLSI DDKKNLSTAA ISNSDVASVI SLKRKHSDCS GDDGNSETKP EIYESLNELK LEEEEELTTV
0401: HHESRSPSNN TTVDIFSIVK GTGRRKNLMR SNPTDKSSEA ENAAGLRVKK IKRTPEDEKE SMVLVEKLRK EIREAVRNKS MEDIRENQFD PKLLAAFRAA
0501: VAGPKTGEAP RRSSALAVKA KKLMLQKGKV RENLTKKIYA DLNGKRKSAW HRDCEVEFWK HRCIQGRKPE KIETLKSVLS LLKNKPADTK TNFSSETPQA
0601: SNPILSRLYL ADTSVFPRND NLKPLLAPKE MGNSQNNGKP TEASKTLPKI SAAKGSSVKA AGSKLNSGNK QSDGQPNLTS SNSKEMVENP DDLKKDKRKW
0701: ALQVLARKKA LAGNNSTQDK EGSPELKGNY PLLAQLPADM RPSLATSRHN KVPVAVRQTQ LYRLTEHLLK KENLLTIRRS AATELAVADA INIEKAIADK
0801: SSSKVVYLNL CSQEILHHSE SKTMDNAVEP NSSSPMADSE SERISSKDSD NPAVLEALRA AGLADSPPNS PTRSVEVLPE KGDSSLDKTR ETGPYNVFDM
0901: DSVPDTDIFG DFEYELDEED YFGATMAKKA SVMQPDESLT KVKVVLSTVQ PGKSLNPSEV VEDEETTTEN LNETTNGKED GKSFVPMELV PEAEGEGEGE
1001: GEGEGEGEGG GEILSVAECE ELYGPGTEKL VERPLIEGFA ENGVKAKAPD SECESNTQRE FIASNFEITC IQEKKLPRSI QKCKPSEKPS KEEKGKADGF
1101: GNSITKKVEA YIKEHIRPLC KSGVINVEQY RWAVTKTTEK VMKYHSKAKS ANFLIKEGDK IKKLAEQYVE TASSGAHHKD KCK
0101: CCIEEETDVV SSPSHYIDDT HYIDENAVVC LDGDLCKIRN TFSYIEGDSN LDTSIACDSC DMWYHAICVG FDVENASEDT WVCPRCLSNE KPHEPDTSPM
0201: ETQPDTSLME TRKSLDISEK TNSGCSVEAV YSGNFSVTVA DDGETALVVS IVKGDESHMG PSDTNPLPVQ AKMDGDPDSS HLKILCREEN TEQVAVKSEL
0301: NQSLPHDISS RLSSDSDQPF FAADIENRAD PVVEKDCLSI DDKKNLSTAA ISNSDVASVI SLKRKHSDCS GDDGNSETKP EIYESLNELK LEEEEELTTV
0401: HHESRSPSNN TTVDIFSIVK GTGRRKNLMR SNPTDKSSEA ENAAGLRVKK IKRTPEDEKE SMVLVEKLRK EIREAVRNKS MEDIRENQFD PKLLAAFRAA
0501: VAGPKTGEAP RRSSALAVKA KKLMLQKGKV RENLTKKIYA DLNGKRKSAW HRDCEVEFWK HRCIQGRKPE KIETLKSVLS LLKNKPADTK TNFSSETPQA
0601: SNPILSRLYL ADTSVFPRND NLKPLLAPKE MGNSQNNGKP TEASKTLPKI SAAKGSSVKA AGSKLNSGNK QSDGQPNLTS SNSKEMVENP DDLKKDKRKW
0701: ALQVLARKKA LAGNNSTQDK EGSPELKGNY PLLAQLPADM RPSLATSRHN KVPVAVRQTQ LYRLTEHLLK KENLLTIRRS AATELAVADA INIEKAIADK
0801: SSSKVVYLNL CSQEILHHSE SKTMDNAVEP NSSSPMADSE SERISSKDSD NPAVLEALRA AGLADSPPNS PTRSVEVLPE KGDSSLDKTR ETGPYNVFDM
0901: DSVPDTDIFG DFEYELDEED YFGATMAKKA SVMQPDESLT KVKVVLSTVQ PGKSLNPSEV VEDEETTTEN LNETTNGKED GKSFVPMELV PEAEGEGEGE
1001: GEGEGEGEGG GEILSVAECE ELYGPGTEKL VERPLIEGFA ENGVKAKAPD SECESNTQRE FIASNFEITC IQEKKLPRSI QKCKPSEKPS KEEKGKADGF
1101: GNSITKKVEA YIKEHIRPLC KSGVINVEQY RWAVTKTTEK VMKYHSKAKS ANFLIKEGDK IKKLAEQYVE TASSGAHHKD KCK
Arabidopsis Description
unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plant /.../37; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). [Source:TAIR;Acc:AT4G10930]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.