Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc03g097100.1.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G10930.1 | Solyc03g097100.1.1 | AT3G03000.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH38611 | Soybean | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 7.19 | 72.13 |
| VIT_02s0025g01650.t01 | Wine grape | nucleus | 44.28 | 42.28 |
| KRH41328 | Soybean | nucleus | 43.63 | 41.27 |
| KRH60053 | Soybean | nucleus | 43.3 | 40.55 |
| CDY05126 | Canola | nucleus | 36.52 | 39.21 |
| CDX90783 | Canola | nucleus | 36.6 | 39.06 |
| AT4G10930.1 | Thale cress | nucleus | 37.42 | 38.72 |
| Bra000729.1-P | Field mustard | nucleus | 36.93 | 38.18 |
| GSMUA_Achr3P31620_001 | Banana | nucleus | 34.15 | 31.38 |
| OQU84317 | Sorghum | nucleus | 31.21 | 30.51 |
| TraesCS3D01G287700.1 | Wheat | nucleus | 31.86 | 30.45 |
| TraesCS3A01G287900.3 | Wheat | nucleus | 31.86 | 29.79 |
| Zm00001d053989_P003 | Maize | plastid | 31.45 | 29.34 |
| TraesCS3B01G322600.5 | Wheat | mitochondrion | 31.62 | 29.3 |
| Os12t0209700-01 | Rice | nucleus | 13.24 | 28.83 |
| Solyc06g069360.2.1 | Tomato | nucleus | 6.94 | 13.08 |
| Solyc01g100130.2.1 | Tomato | nucleus | 5.56 | 7.35 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | InterPro:EloA-BP1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006464 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 |
| GO:GO:0043161 | GO:GO:0046872 | GO:GO:0061630 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:IPR019787 |
| UniProt:K4DFS2 | PFAM:PF00628 | PFAM:PF13639 | PFAM:PF15870 | ScanProsite:PS00518 | PFscan:PS50016 |
| PFscan:PS50089 | PANTHER:PTHR22937 | PANTHER:PTHR22937:SF76 | SMART:SM00184 | SMART:SM00249 | SUPFAM:SSF57850 |
| SUPFAM:SSF57903 | EnsemblPlantsGene:Solyc12g055910.1 | EnsemblPlants:Solyc12g055910.1.1 | UniParc:UPI0002769D22 | InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD |
| InterPro:Znf_PHD-finger | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_RING_CS | SEG:seg | : |
Description
No Description!
Coordinates
chr12:+:61895050..61908117
Molecular Weight (calculated)
134122.0 Da
IEP (calculated)
4.982
GRAVY (calculated)
-0.561
Length
1224 amino acids
Sequence
(BLAST)
(BLAST)
0001: MCPLKSPPLT DYSTLDGERC GICMDVVIDR GVLDCCQHWF CFTCIDNWAT ITNLCPLCQS EFQLITCVPV YDTIGGSQTD EDLYTRDDDW SIEGKTNTLS
0101: FPSYYIDENA VVCLDGDGCK VRAGSVTNEG DLNLDTSIAC DSCDLWYHAF CVGFDPEDTS ESTWLCPRCV DKLPEKSAPY KKLGPENASN NCLLEASFSG
0201: KVSVSIADAG ETAVVVSIVE RNNQGEIPGR KLSNLDTKEA INTGILVPDP VPDTSSIELS LRQNECPDSA QPATPVGVKS DASTDLCNEL IQPNLDLHLG
0301: LSENSCSAST VDVTNMMVAG DQVLQAALLK NTSECLCPGE KVMPDKNEEK VVASCAKRKR RENRNADNGG IRAKAELAYD LKRVKIEGST EQINAKDQTP
0401: VSASDNSDKP RVIIPKDKKL KCKPENKDLS SDIMDIVKGT GRKILKKLAH SNQDGMSSIQ KESAARLRVK KIMRRTGDED SSVLVENLRK EIREAVRNKS
0501: YGDKGENQLD PKLLTAFRAV VTGSTPETKK PLVDLKAKRS LLQKGKVREN LTKKIYGIGG RRRRAWTRDC EVEFWKYRCS NMSKPEKIQT LKSVLDLLRD
0601: DSENAATTPV NEGEEKSSIL SRLYLADNSV FPRKEDIKPV STLTVVANEN KENGSTSYTS ATSFPSPSNI VPRAHVASLV VASSLEIKGA KTSVPTTKAD
0701: ITRNVLPIKG TDRPSTSTSS GLKLSTKEEI TVKCDNTRSD KKKWALEVLA RKTAATSKSG TLENEEDSAV LKNNYPLLAQ LPKDMRPALA PSRHNKIPMS
0801: VRLAQLHRLT EHLLKKTNLS VMRRTAETEL AIADAVNIEK EVADRSNSKL VYINFCSQEL RRSDNASNVG VAEPSPCQNL VLTNSSDEVS DVHFSDPAVN
0901: EALRNAGLLS DSPPNSPSCA LEEAKEESCI SKEVEDHGPE NVFEVDDPPE LDIYGDFEYN LEDDEFSGAG TSMISVLQPE ESKLKVVFST INPVGTDGAL
1001: ELQNLEKQDI LEGPVDTSSL SGCETSGVVG RSTAADQTEN CLGHSSPIDE DLSVVDFEEL YGPDKELLIE KYPEMASVKL DELAMDNEVQ QSNGVDESKQ
1101: ASESSEQGNG SSSTASKCPN SPNKLSKSEN LQINKKSKSS ADKESASNSS VSMKVKAYVK EHIRPLCKSG VISVDQYRWA VDKTTEKVMK YHPKDKNANF
1201: LIKEGDKIKK LAEQYVETAQ HTTK
0101: FPSYYIDENA VVCLDGDGCK VRAGSVTNEG DLNLDTSIAC DSCDLWYHAF CVGFDPEDTS ESTWLCPRCV DKLPEKSAPY KKLGPENASN NCLLEASFSG
0201: KVSVSIADAG ETAVVVSIVE RNNQGEIPGR KLSNLDTKEA INTGILVPDP VPDTSSIELS LRQNECPDSA QPATPVGVKS DASTDLCNEL IQPNLDLHLG
0301: LSENSCSAST VDVTNMMVAG DQVLQAALLK NTSECLCPGE KVMPDKNEEK VVASCAKRKR RENRNADNGG IRAKAELAYD LKRVKIEGST EQINAKDQTP
0401: VSASDNSDKP RVIIPKDKKL KCKPENKDLS SDIMDIVKGT GRKILKKLAH SNQDGMSSIQ KESAARLRVK KIMRRTGDED SSVLVENLRK EIREAVRNKS
0501: YGDKGENQLD PKLLTAFRAV VTGSTPETKK PLVDLKAKRS LLQKGKVREN LTKKIYGIGG RRRRAWTRDC EVEFWKYRCS NMSKPEKIQT LKSVLDLLRD
0601: DSENAATTPV NEGEEKSSIL SRLYLADNSV FPRKEDIKPV STLTVVANEN KENGSTSYTS ATSFPSPSNI VPRAHVASLV VASSLEIKGA KTSVPTTKAD
0701: ITRNVLPIKG TDRPSTSTSS GLKLSTKEEI TVKCDNTRSD KKKWALEVLA RKTAATSKSG TLENEEDSAV LKNNYPLLAQ LPKDMRPALA PSRHNKIPMS
0801: VRLAQLHRLT EHLLKKTNLS VMRRTAETEL AIADAVNIEK EVADRSNSKL VYINFCSQEL RRSDNASNVG VAEPSPCQNL VLTNSSDEVS DVHFSDPAVN
0901: EALRNAGLLS DSPPNSPSCA LEEAKEESCI SKEVEDHGPE NVFEVDDPPE LDIYGDFEYN LEDDEFSGAG TSMISVLQPE ESKLKVVFST INPVGTDGAL
1001: ELQNLEKQDI LEGPVDTSSL SGCETSGVVG RSTAADQTEN CLGHSSPIDE DLSVVDFEEL YGPDKELLIE KYPEMASVKL DELAMDNEVQ QSNGVDESKQ
1101: ASESSEQGNG SSSTASKCPN SPNKLSKSEN LQINKKSKSS ADKESASNSS VSMKVKAYVK EHIRPLCKSG VISVDQYRWA VDKTTEKVMK YHPKDKNANF
1201: LIKEGDKIKK LAEQYVETAQ HTTK
0001: MELDFDASNL VEDEAVEVEH NGMTEIEGER CGICMDIIID RGVLDCCQHW FCFECIDNWS TIMNLCPLCQ REFQLITCVP VFDSGESSKV DEDLVSGDED
0101: CCIEEETDVV SSPSHYIDDT HYIDENAVVC LDGDLCKIRN TFSYIEGDSN LDTSIACDSC DMWYHAICVG FDVENASEDT WVCPRCLSNE KPHEPDTSPM
0201: ETQPDTSLME TRKSLDISEK TNSGCSVEAV YSGNFSVTVA DDGETALVVS IVKGDESHMG PSDTNPLPVQ AKMDGDPDSS HLKILCREEN TEQVAVKSEL
0301: NQSLPHDISS RLSSDSDQPF FAADIENRAD PVVEKDCLSI DDKKTISNSD VASVISLKRK HSDCSGDDGN SETKPEIYES LNELKLEEEE ELTTVHHESR
0401: SPSNNTTVDI FSIVKGTGRR KNLMRSNPTD KSSEAENAAG LRVKKIKRTP EDEKESMVLV EKLRKEIREA VRNKSMEDIR ENQFDPKLLA AFRAAVAGPK
0501: TGEAPRRSSA LAVKAKKLML QKGKVRENLT KKIYADLNGK RKSAWHRDCE VEFWKHRCIQ GRKPEKIETL KSVLSLLKNK PADTKTNFSS ETPQASNPIL
0601: SRLYLADTSV FPRNDNLKPL LAPKEMGNSQ NNGKPTEASK TLPKISAAKG SSVKAAGSKL NSGNKQSDGQ PNLTSSNSKE MVENPDDLKK DKRKWALQVL
0701: ARKKALAGNN STQDKEGSPE LKGNYPLLAQ LPADMRPSLA TSRHNKVPVA VRQTQLYRLT EHLLKKENLL TIRRSAATEL AVADAINIEK AIADKSSSKV
0801: VYLNLCSQEI LHHSESKTMD NAVEPNSSSP MADSESERIS SKDSDNPAVL EALRAAGLAD SPPNSPTRSV EVLPEKGDSS LDKTRETGPY NVFDMDSVPD
0901: TDIFGDFEYE LDEEDYFGAT MAKKASVMQP DESLTKVKVV LSTVQPGKSL NPSEVVEDEE TTTENLNETT NGKEDGKSFV PMELVPEAEG EGEGEGEGEG
1001: EGEGGGEILS VAECEELYGP GTEKLVERPL IEGFAENGVK AKAPDSECES NTQREFIASN FEITCIQEKK LPRSIQKCKP SEKPSKEEKG KADGFGNSIT
1101: KKVEAYIKEH IRPLCKSGVI NVEQYRWAVT KTTEKVMKYH SKAKSANFLI KEGDKIKKLA EQYVETASSG AHHKDKCK
0101: CCIEEETDVV SSPSHYIDDT HYIDENAVVC LDGDLCKIRN TFSYIEGDSN LDTSIACDSC DMWYHAICVG FDVENASEDT WVCPRCLSNE KPHEPDTSPM
0201: ETQPDTSLME TRKSLDISEK TNSGCSVEAV YSGNFSVTVA DDGETALVVS IVKGDESHMG PSDTNPLPVQ AKMDGDPDSS HLKILCREEN TEQVAVKSEL
0301: NQSLPHDISS RLSSDSDQPF FAADIENRAD PVVEKDCLSI DDKKTISNSD VASVISLKRK HSDCSGDDGN SETKPEIYES LNELKLEEEE ELTTVHHESR
0401: SPSNNTTVDI FSIVKGTGRR KNLMRSNPTD KSSEAENAAG LRVKKIKRTP EDEKESMVLV EKLRKEIREA VRNKSMEDIR ENQFDPKLLA AFRAAVAGPK
0501: TGEAPRRSSA LAVKAKKLML QKGKVRENLT KKIYADLNGK RKSAWHRDCE VEFWKHRCIQ GRKPEKIETL KSVLSLLKNK PADTKTNFSS ETPQASNPIL
0601: SRLYLADTSV FPRNDNLKPL LAPKEMGNSQ NNGKPTEASK TLPKISAAKG SSVKAAGSKL NSGNKQSDGQ PNLTSSNSKE MVENPDDLKK DKRKWALQVL
0701: ARKKALAGNN STQDKEGSPE LKGNYPLLAQ LPADMRPSLA TSRHNKVPVA VRQTQLYRLT EHLLKKENLL TIRRSAATEL AVADAINIEK AIADKSSSKV
0801: VYLNLCSQEI LHHSESKTMD NAVEPNSSSP MADSESERIS SKDSDNPAVL EALRAAGLAD SPPNSPTRSV EVLPEKGDSS LDKTRETGPY NVFDMDSVPD
0901: TDIFGDFEYE LDEEDYFGAT MAKKASVMQP DESLTKVKVV LSTVQPGKSL NPSEVVEDEE TTTENLNETT NGKEDGKSFV PMELVPEAEG EGEGEGEGEG
1001: EGEGGGEILS VAECEELYGP GTEKLVERPL IEGFAENGVK AKAPDSECES NTQREFIASN FEITCIQEKK LPRSIQKCKP SEKPSKEEKG KADGFGNSIT
1101: KKVEAYIKEH IRPLCKSGVI NVEQYRWAVT KTTEKVMKYH SKAKSANFLI KEGDKIKKLA EQYVETASSG AHHKDKCK
Arabidopsis Description
unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plant /.../37; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). [Source:TAIR;Acc:AT4G10930]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.