Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400010393 | Potato | nucleus | 85.69 | 85.69 |
| KRH56752 | Soybean | nucleus | 20.77 | 34.44 |
| VIT_17s0000g04770.t01 | Wine grape | nucleus | 34.0 | 34.1 |
| KRH03187 | Soybean | nucleus | 29.23 | 31.1 |
| GSMUA_Achr3P10630_001 | Banana | nucleus | 30.46 | 29.29 |
| Zm00001d045755_P001 | Maize | nucleus | 26.31 | 23.33 |
| EER88243 | Sorghum | nucleus | 27.69 | 23.2 |
| Os06t0283200-01 | Rice | nucleus | 26.31 | 22.41 |
| TraesCS7B01G119600.1 | Wheat | nucleus | 28.46 | 20.72 |
| TraesCS7D01G214800.1 | Wheat | nucleus | 28.77 | 19.81 |
| TraesCS7A01G212900.1 | Wheat | nucleus | 28.0 | 19.24 |
| HORVU7Hr1G043160.1 | Barley | nucleus | 17.38 | 15.46 |
| Solyc01g100130.2.1 | Tomato | nucleus | 16.0 | 11.24 |
| Solyc12g055910.1.1 | Tomato | nucleus | 13.08 | 6.94 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.2 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0046872 | InterPro:IPR001841 |
| InterPro:IPR013083 | InterPro:IPR019787 | UniProt:K4C8A9 | PFAM:PF00628 | PFAM:PF13639 | ScanProsite:PS00518 |
| ScanProsite:PS01359 | PFscan:PS50016 | PFscan:PS50089 | PANTHER:PTHR10615 | PANTHER:PTHR10615:SF132 | SMART:SM00184 |
| SMART:SM00249 | SUPFAM:SSF57850 | SUPFAM:SSF57903 | EnsemblPlantsGene:Solyc06g069360.2 | EnsemblPlants:Solyc06g069360.2.1 | UniParc:UPI000276696F |
| InterPro:Zinc_finger_PHD-type_CS | InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD | InterPro:Znf_PHD-finger | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD |
| InterPro:Znf_RING_CS | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr6:+:43107226..43113858
Molecular Weight (calculated)
71360.4 Da
IEP (calculated)
8.463
GRAVY (calculated)
-0.514
Length
650 amino acids
Sequence
(BLAST)
(BLAST)
001: MASDEEDIGV PEMHPNKRVK TLTLSSPESS PSSSDKGKSK LELSNLETEQ DCCGICLTET GHGTTIIRGV IDCCNHYFCF VCIIEWSKVE SRCPMCKRRF
101: SIIRRPARPP IFPSERVVNV PVRDQVYHCH GNATTGPRDL YAEVQCNVCH STADDVLLLL CDLCDTAYHT YCVGLGATVP EGDWFCADCA LLKAEQAQSD
201: IKTDCCTQTS FGEPQSAEST RQVSIYDIVR ESRVDGVEST PTGALDASDS SSRIESRRQS TSRSSSIRLG SVGNNGVAGR TTKFNARTLG HCRNVHDRIR
301: ILREHWNGFR SGSLRFPSSK VTNASSAKLK PVRGSNSAER PLVCCSSQPR TSQPSNQNRP DSKGPTEVKK AWKMMNMAKA IEQNSVGNKS SVQASKHSVQ
401: KNTSYKEASE SSSTSIKMKI EQHRPPYIQN VGPGSHSEND VCKLDIGSKG ASGVYKGSSM SCRPLYSELV SSRESQNSLQ PYVCDANNGL PWKNKSCAGA
501: THLSSSIRLT SISTTVGHEK EISSSSNSIV NPQEKLKVEK SVTKRRVEVK SDAKTEIQSL VKLNLKILCG DKKLEVDTFK QVARVATHSI LAACGLEHKT
601: HGISSLPECV CVHSEEDKEL SRSTLMPKSC RECFFLFVKN VVNTVLLDKR
101: SIIRRPARPP IFPSERVVNV PVRDQVYHCH GNATTGPRDL YAEVQCNVCH STADDVLLLL CDLCDTAYHT YCVGLGATVP EGDWFCADCA LLKAEQAQSD
201: IKTDCCTQTS FGEPQSAEST RQVSIYDIVR ESRVDGVEST PTGALDASDS SSRIESRRQS TSRSSSIRLG SVGNNGVAGR TTKFNARTLG HCRNVHDRIR
301: ILREHWNGFR SGSLRFPSSK VTNASSAKLK PVRGSNSAER PLVCCSSQPR TSQPSNQNRP DSKGPTEVKK AWKMMNMAKA IEQNSVGNKS SVQASKHSVQ
401: KNTSYKEASE SSSTSIKMKI EQHRPPYIQN VGPGSHSEND VCKLDIGSKG ASGVYKGSSM SCRPLYSELV SSRESQNSLQ PYVCDANNGL PWKNKSCAGA
501: THLSSSIRLT SISTTVGHEK EISSSSNSIV NPQEKLKVEK SVTKRRVEVK SDAKTEIQSL VKLNLKILCG DKKLEVDTFK QVARVATHSI LAACGLEHKT
601: HGISSLPECV CVHSEEDKEL SRSTLMPKSC RECFFLFVKN VVNTVLLDKR
001: MGKRNTSWAR NSNRKVRSKD KGSDESDEDY VISDEDEEES EADLKEEYAS SVDGEPSFDG FNGSDAVEDE ELDEVEEEDV MLRNVEWPKV KTGPRGNRKI
101: TGCKSRKTNQ VVVSDNEDVD LDDADDEDDE IRNSRNAVGK SGSLDGEKHQ RIGLGKRRRV FYEIEDEDGD YPEEDGDEEE ERDVENVDSN SLHDGEDGKM
201: ALEEQDNVSH ETEKEDDGDY EDEDEDDDGD EDFTADEDVS LDEEEEEEII ACNKNALKVC KGNKRKRRSG EGRKRRKKCS VAKTRLTRGR KRRVRNTKKG
301: VDEDDDDFVD DCLPARKKAK TKSSRPRPRR RCTVPSDSDV ASSGESDYEY TISEEEREQI REAGSLLKSS VNHASSIRQT TVNKDLPQLR KSPVKKGEKK
401: VELVKRDVIK NVCGICLSEE DMRRLKGTLD CCSHYFCFTC IMEWSKVESR CPLCKQRFRT ISKPARSTPG VDLREVVIPV PERDQVYQPT EEELRSYLDP
501: YENIICTECH QGDDDGLMLL CDLCDSSAHT YCVGLGREVP EGNWYCEGCR PVALGSASSQ THIISEQQRG SGFYSRPSPL VVSGQYQDVS LIVSPRTPFF
601: NGENLFSPRI PNGDAQGSSP SGLGATTLSR RRTLHRHIQN IINGDRLINM GARTGGTSSD GFVTTQIGHG RTIDPSQPVA SQETGISLYA ISEERLPNNN
701: SLISAHDPEL LSPKLDEFGS EEAFRRLSNN TFLGERPIDL GFHHGLAQGD PLVSNQQRLH SHMPNTMSSM AGERLQERVK AHLKNLSSQN DLGQTTFDEI
801: STCSIHTILA ACGLEHESSE VHLVPPPVTC THHHMTPGSS SSSSSGSSLM KGCCYSCFDS FVEDVVKMIL DTRQPHWLSL GLH
101: TGCKSRKTNQ VVVSDNEDVD LDDADDEDDE IRNSRNAVGK SGSLDGEKHQ RIGLGKRRRV FYEIEDEDGD YPEEDGDEEE ERDVENVDSN SLHDGEDGKM
201: ALEEQDNVSH ETEKEDDGDY EDEDEDDDGD EDFTADEDVS LDEEEEEEII ACNKNALKVC KGNKRKRRSG EGRKRRKKCS VAKTRLTRGR KRRVRNTKKG
301: VDEDDDDFVD DCLPARKKAK TKSSRPRPRR RCTVPSDSDV ASSGESDYEY TISEEEREQI REAGSLLKSS VNHASSIRQT TVNKDLPQLR KSPVKKGEKK
401: VELVKRDVIK NVCGICLSEE DMRRLKGTLD CCSHYFCFTC IMEWSKVESR CPLCKQRFRT ISKPARSTPG VDLREVVIPV PERDQVYQPT EEELRSYLDP
501: YENIICTECH QGDDDGLMLL CDLCDSSAHT YCVGLGREVP EGNWYCEGCR PVALGSASSQ THIISEQQRG SGFYSRPSPL VVSGQYQDVS LIVSPRTPFF
601: NGENLFSPRI PNGDAQGSSP SGLGATTLSR RRTLHRHIQN IINGDRLINM GARTGGTSSD GFVTTQIGHG RTIDPSQPVA SQETGISLYA ISEERLPNNN
701: SLISAHDPEL LSPKLDEFGS EEAFRRLSNN TFLGERPIDL GFHHGLAQGD PLVSNQQRLH SHMPNTMSSM AGERLQERVK AHLKNLSSQN DLGQTTFDEI
801: STCSIHTILA ACGLEHESSE VHLVPPPVTC THHHMTPGSS SSSSSGSSLM KGCCYSCFDS FVEDVVKMIL DTRQPHWLSL GLH
Arabidopsis Description
F18C1.6 protein [Source:UniProtKB/TrEMBL;Acc:Q9M9X2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.