Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d045755_P001 | Maize | nucleus | 37.48 | 39.02 |
| EER88243 | Sorghum | nucleus | 36.83 | 36.21 |
| TraesCS7B01G119600.1 | Wheat | nucleus | 40.24 | 34.38 |
| TraesCS7D01G214800.1 | Wheat | nucleus | 40.37 | 32.63 |
| TraesCS7A01G212900.1 | Wheat | nucleus | 40.24 | 32.45 |
| VIT_17s0000g04770.t01 | Wine grape | nucleus | 23.46 | 27.62 |
| KRH56752 | Soybean | nucleus | 14.15 | 27.55 |
| GSMUA_Achr3P10630_001 | Banana | nucleus | 23.72 | 26.78 |
| KRH03187 | Soybean | nucleus | 21.23 | 26.51 |
| Solyc06g069360.2.1 | Tomato | nucleus | 22.41 | 26.31 |
| HORVU7Hr1G043160.1 | Barley | nucleus | 25.03 | 26.13 |
| PGSC0003DMT400010393 | Potato | nucleus | 22.02 | 25.85 |
| Os03t0302200-01 | Rice | nucleus | 13.5 | 12.89 |
| Os07t0690300-01 | Rice | nucleus | 7.47 | 10.86 |
| Os06t0283300-01 | Rice | plasma membrane | 5.11 | 8.99 |
| Os12t0209700-01 | Rice | nucleus | 4.46 | 6.05 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.2 | EntrezGene:4340764 | EMBL:AK073829 | ProteinID:BAD69258.1 | ProteinID:BAF19309.1 |
| ProteinID:BAS97258.1 | ncoils:Coil | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004672 |
| GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006464 | GO:GO:0006468 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016301 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 |
| GO:GO:0043161 | GO:GO:0046872 | GO:GO:0061630 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:IPR019787 |
| EnsemblPlantsGene:Os06g0283200 | EnsemblPlants:Os06t0283200-01 | PFAM:PF00628 | PFAM:PF13639 | ScanProsite:PS00518 | ScanProsite:PS01359 |
| PFscan:PS50016 | PFscan:PS50089 | PANTHER:PTHR23041 | PANTHER:PTHR23041:SF63 | UniProt:Q5VMR7 | SMART:SM00184 |
| SMART:SM00249 | SUPFAM:SSF57850 | SUPFAM:SSF57903 | UniParc:UPI00004580D5 | RefSeq:XP_015641341.1 | InterPro:Zinc_finger_PHD-type_CS |
| InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD | InterPro:Znf_PHD-finger | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_RING_CS |
| SEG:seg | : | : | : | : | : |
Description
RING finger proteinZinc finger, RING/FYVE/PHD-type domain containing protein. (Os06t0283200-01)
Coordinates
chr6:+:10003546..10006951
Molecular Weight (calculated)
83519.0 Da
IEP (calculated)
7.789
GRAVY (calculated)
-0.646
Length
763 amino acids
Sequence
(BLAST)
(BLAST)
001: MASPPAGDAP PPAAAAREEE EEEGVSCGIC LTDARRAVRG ELDCCAHHFC FVCIMAWARV ESRCPFCKAR FRTITRPPVP GRFPSQRVVA VPERNQACNP
101: SGNGSSTVDA DLYANTSCSV CNLSNDDELL MLCELCDSAV HTYCAGLGTE IPEGDWFCTD CMTAKEEHSR CEIDDDNSSD HGEFKITIEV PIADPVAAPS
201: ISDIVDEGHS PNLVQRSSVQ SNRPSISDPV PSIYDIVDDD YTTIPIGRVN ARSTRLDSRA ERLPSQGISV GPQCPESPQE RENSRVCSHA RSRIESERAR
301: TLRNSRNLGS RIRELRENWS ALRSGSIGFA TQLHNRRRGN GAGTCDIEER HRSTTTFMEV AASSSGHAKK ISPKNSSDVH KAWKMLEMAK SSGGKKKPDN
401: PSSLNCSVPF SMGNRSTSYS PIDAILGHKN NKLYDGITQK NNAEQHRSTN MENKPPTMNF GECRKLQEKF HGSAHGRTPS TIMRQESLTG KVSSSSNNEK
501: HNRSINMENR PPTVNFGEHR KLQESASVHG RIPSTVMMQE NLNGKVASSS NNEDAGQIFE SSRDVSRPEK SKPVVSCPLT FSLLSGQSMV TSSQQLRPGW
601: SQSTEMVSSQ EPSATAASID IGTAGANDKV KGSRPDRLER KRKLGSETHD DKGSKRSMSS CKIRKSDISF LAIRELKLLN IDKTYGSDTF KEVARAATHT
701: VLASCGLEHS PSVALALPRP VCKHTCKTEP LPSPDVLTDF CRECLCNFVK EVISSLLSGR KME
101: SGNGSSTVDA DLYANTSCSV CNLSNDDELL MLCELCDSAV HTYCAGLGTE IPEGDWFCTD CMTAKEEHSR CEIDDDNSSD HGEFKITIEV PIADPVAAPS
201: ISDIVDEGHS PNLVQRSSVQ SNRPSISDPV PSIYDIVDDD YTTIPIGRVN ARSTRLDSRA ERLPSQGISV GPQCPESPQE RENSRVCSHA RSRIESERAR
301: TLRNSRNLGS RIRELRENWS ALRSGSIGFA TQLHNRRRGN GAGTCDIEER HRSTTTFMEV AASSSGHAKK ISPKNSSDVH KAWKMLEMAK SSGGKKKPDN
401: PSSLNCSVPF SMGNRSTSYS PIDAILGHKN NKLYDGITQK NNAEQHRSTN MENKPPTMNF GECRKLQEKF HGSAHGRTPS TIMRQESLTG KVSSSSNNEK
501: HNRSINMENR PPTVNFGEHR KLQESASVHG RIPSTVMMQE NLNGKVASSS NNEDAGQIFE SSRDVSRPEK SKPVVSCPLT FSLLSGQSMV TSSQQLRPGW
601: SQSTEMVSSQ EPSATAASID IGTAGANDKV KGSRPDRLER KRKLGSETHD DKGSKRSMSS CKIRKSDISF LAIRELKLLN IDKTYGSDTF KEVARAATHT
701: VLASCGLEHS PSVALALPRP VCKHTCKTEP LPSPDVLTDF CRECLCNFVK EVISSLLSGR KME
001: MGKRNTSWAR NSNRKVRSKD KGSDESDEDY VISDEDEEES EADLKEEYAS SVDGEPSFDG FNGSDAVEDE ELDEVEEEDV MLRNVEWPKV KTGPRGNRKI
101: TGCKSRKTNQ VVVSDNEDVD LDDADDEDDE IRNSRNAVGK SGSLDGEKHQ RIGLGKRRRV FYEIEDEDGD YPEEDGDEEE ERDVENVDSN SLHDGEDGKM
201: ALEEQDNVSH ETEKEDDGDY EDEDEDDDGD EDFTADEDVS LDEEEEEEII ACNKNALKVC KGNKRKRRSG EGRKRRKKCS VAKTRLTRGR KRRVRNTKKG
301: VDEDDDDFVD DCLPARKKAK TKSSRPRPRR RCTVPSDSDV ASSGESDYEY TISEEEREQI REAGSLLKSS VNHASSIRQT TVNKDLPQLR KSPVKKGEKK
401: VELVKRDVIK NVCGICLSEE DMRRLKGTLD CCSHYFCFTC IMEWSKVESR CPLCKQRFRT ISKPARSTPG VDLREVVIPV PERDQVYQPT EEELRSYLDP
501: YENIICTECH QGDDDGLMLL CDLCDSSAHT YCVGLGREVP EGNWYCEGCR PVALGSASSQ THIISEQQRG SGFYSRPSPL VVSGQYQDVS LIVSPRTPFF
601: NGENLFSPRI PNGDAQGSSP SGLGATTLSR RRTLHRHIQN IINGDRLINM GARTGGTSSD GFVTTQIGHG RTIDPSQPVA SQETGISLYA ISEERLPNNN
701: SLISAHDPEL LSPKLDEFGS EEAFRRLSNN TFLGERPIDL GFHHGLAQGD PLVSNQQRLH SHMPNTMSSM AGERLQERVK AHLKNLSSQN DLGQTTFDEI
801: STCSIHTILA ACGLEHESSE VHLVPPPVTC THHHMTPGSS SSSSSGSSLM KGCCYSCFDS FVEDVVKMIL DTRQPHWLSL GLH
101: TGCKSRKTNQ VVVSDNEDVD LDDADDEDDE IRNSRNAVGK SGSLDGEKHQ RIGLGKRRRV FYEIEDEDGD YPEEDGDEEE ERDVENVDSN SLHDGEDGKM
201: ALEEQDNVSH ETEKEDDGDY EDEDEDDDGD EDFTADEDVS LDEEEEEEII ACNKNALKVC KGNKRKRRSG EGRKRRKKCS VAKTRLTRGR KRRVRNTKKG
301: VDEDDDDFVD DCLPARKKAK TKSSRPRPRR RCTVPSDSDV ASSGESDYEY TISEEEREQI REAGSLLKSS VNHASSIRQT TVNKDLPQLR KSPVKKGEKK
401: VELVKRDVIK NVCGICLSEE DMRRLKGTLD CCSHYFCFTC IMEWSKVESR CPLCKQRFRT ISKPARSTPG VDLREVVIPV PERDQVYQPT EEELRSYLDP
501: YENIICTECH QGDDDGLMLL CDLCDSSAHT YCVGLGREVP EGNWYCEGCR PVALGSASSQ THIISEQQRG SGFYSRPSPL VVSGQYQDVS LIVSPRTPFF
601: NGENLFSPRI PNGDAQGSSP SGLGATTLSR RRTLHRHIQN IINGDRLINM GARTGGTSSD GFVTTQIGHG RTIDPSQPVA SQETGISLYA ISEERLPNNN
701: SLISAHDPEL LSPKLDEFGS EEAFRRLSNN TFLGERPIDL GFHHGLAQGD PLVSNQQRLH SHMPNTMSSM AGERLQERVK AHLKNLSSQN DLGQTTFDEI
801: STCSIHTILA ACGLEHESSE VHLVPPPVTC THHHMTPGSS SSSSSGSSLM KGCCYSCFDS FVEDVVKMIL DTRQPHWLSL GLH
Arabidopsis Description
F18C1.6 protein [Source:UniProtKB/TrEMBL;Acc:Q9M9X2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.