Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G212900.1 | Wheat | nucleus | 94.92 | 94.71 |
| TraesCS7B01G119600.1 | Wheat | nucleus | 87.29 | 92.27 |
| HORVU7Hr1G043160.1 | Barley | nucleus | 56.89 | 73.46 |
| Zm00001d045755_P001 | Maize | nucleus | 32.63 | 42.02 |
| Os06t0283200-01 | Rice | nucleus | 32.63 | 40.37 |
| EER88243 | Sorghum | nucleus | 33.05 | 40.21 |
| Solyc06g069360.2.1 | Tomato | nucleus | 19.81 | 28.77 |
| KRH56752 | Soybean | nucleus | 11.76 | 28.32 |
| PGSC0003DMT400010393 | Potato | nucleus | 19.17 | 27.85 |
| VIT_17s0000g04770.t01 | Wine grape | nucleus | 18.86 | 27.47 |
| KRH03187 | Soybean | nucleus | 17.58 | 27.17 |
| GSMUA_Achr3P10630_001 | Banana | nucleus | 18.54 | 25.89 |
| TraesCS2D01G092600.1 | Wheat | nucleus | 13.14 | 14.3 |
| TraesCS4D01G187800.1 | Wheat | nucleus | 9.85 | 10.63 |
| TraesCS3D01G287700.1 | Wheat | nucleus | 12.08 | 8.9 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.2 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:IPR019787 | PFAM:PF00628 |
| PFAM:PF13639 | ScanProsite:PS00518 | PFscan:PS50016 | PFscan:PS50089 | PANTHER:PTHR10615 | PANTHER:PTHR10615:SF132 |
| SMART:SM00184 | SMART:SM00249 | SUPFAM:SSF57850 | SUPFAM:SSF57903 | EnsemblPlantsGene:TraesCS7D01G214800 | EnsemblPlants:TraesCS7D01G214800.1 |
| InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD | InterPro:Znf_PHD-finger | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_RING_CS |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr7D:+:174407732..174412267
Molecular Weight (calculated)
101639.0 Da
IEP (calculated)
8.819
GRAVY (calculated)
-0.661
Length
944 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSSAGDGLA PPSSASKGKA RMDDDAVALA PEGVPCGICF TDSRRAIRGE LDCCAHHFCF VCIMAWARVE SRCPFCKARF RTIRRPPVPG RLPSERVVNV
101: TERNQVYHPR GNVSSVVSTD PYVNSGCSVC NCSSDEDLLL LCELCDVASH TYCVGLGTTV PEGDWFCKDC ETSKEEHSRC QIDDGGSSDH GEIEITIEVP
201: TAEPVTEPSA SDIVDEGYSL SSVRRTNTRS SGTTIEVPTA EPVTEPSVSD IVDEGYSLSS LRRTNTRSSG TTIEVPTVQP VTEPSVSDIV DGSYSLSSLR
301: RRNTRSSGPI PVPSIYDNVD EDYGTIPVHG TNAQSSGSFP VPSVYDIVDE DYEINPLRRT NTRSTRPDRN ANDLPSQGTS SDGSYSHESP QGRGTGRALL
401: HAHARFGTER ARTFRNSRNL NNRIMLLREN WPALRAGSAG FARHLHNNSA SSSVKGHQQS AAPPPKETRY VNKAWKMLEM AKSAGGRKKC DKPSSLDCTP
501: RFSMGNRSTS FSPIDTILGQ KKQSLSPTVT QRNAMKFDRG AKRDNILPRK DVVGHCDLPG NRHVLVREGI GSFQCRMTNQ ESPNGKVALS SHSQHVDQTP
601: ESSCGGKVAS SSHRQHVDQT LESVHGPLGS GKPKMDALHP SANSLLSGRP TMISPLQIVP SAGSQSGAKV NPQEPSAVCA ATSNEIGTMA ATVEVRKSSG
701: PDRGESKRKH CSGTRDDQGS KKPRVNPQEP SAVRAATSNE IGTVAPTVEV RKSSGPDRGE SKRKHRPGTR DDQGSKQPRV NPQEPSAVRA VTSNEIGTVS
801: ATVEVRKSSG LDRGESKRKH RSGTRDDQGS KKPRKSDKLA KSEISCLAML ELKLLKIDKT YGSDRFKEAA RAATHTVLAS YGLEHTPSVA LALPKPVCKH
901: SCRTGSSKAS AIANTCKECL RGFVKQAISS VLASKQMDQT AASC
101: TERNQVYHPR GNVSSVVSTD PYVNSGCSVC NCSSDEDLLL LCELCDVASH TYCVGLGTTV PEGDWFCKDC ETSKEEHSRC QIDDGGSSDH GEIEITIEVP
201: TAEPVTEPSA SDIVDEGYSL SSVRRTNTRS SGTTIEVPTA EPVTEPSVSD IVDEGYSLSS LRRTNTRSSG TTIEVPTVQP VTEPSVSDIV DGSYSLSSLR
301: RRNTRSSGPI PVPSIYDNVD EDYGTIPVHG TNAQSSGSFP VPSVYDIVDE DYEINPLRRT NTRSTRPDRN ANDLPSQGTS SDGSYSHESP QGRGTGRALL
401: HAHARFGTER ARTFRNSRNL NNRIMLLREN WPALRAGSAG FARHLHNNSA SSSVKGHQQS AAPPPKETRY VNKAWKMLEM AKSAGGRKKC DKPSSLDCTP
501: RFSMGNRSTS FSPIDTILGQ KKQSLSPTVT QRNAMKFDRG AKRDNILPRK DVVGHCDLPG NRHVLVREGI GSFQCRMTNQ ESPNGKVALS SHSQHVDQTP
601: ESSCGGKVAS SSHRQHVDQT LESVHGPLGS GKPKMDALHP SANSLLSGRP TMISPLQIVP SAGSQSGAKV NPQEPSAVCA ATSNEIGTMA ATVEVRKSSG
701: PDRGESKRKH CSGTRDDQGS KKPRVNPQEP SAVRAATSNE IGTVAPTVEV RKSSGPDRGE SKRKHRPGTR DDQGSKQPRV NPQEPSAVRA VTSNEIGTVS
801: ATVEVRKSSG LDRGESKRKH RSGTRDDQGS KKPRKSDKLA KSEISCLAML ELKLLKIDKT YGSDRFKEAA RAATHTVLAS YGLEHTPSVA LALPKPVCKH
901: SCRTGSSKAS AIANTCKECL RGFVKQAISS VLASKQMDQT AASC
001: MGKRNTSWAR NSNRKVRSKD KGSDESDEDY VISDEDEEES EADLKEEYAS SVDGEPSFDG FNGSDAVEDE ELDEVEEEDV MLRNVEWPKV KTGPRGNRKI
101: TGCKSRKTNQ VVVSDNEDVD LDDADDEDDE IRNSRNAVGK SGSLDGEKHQ RIGLGKRRRV FYEIEDEDGD YPEEDGDEEE ERDVENVDSN SLHDGEDGKM
201: ALEEQDNVSH ETEKEDDGDY EDEDEDDDGD EDFTADEDVS LDEEEEEEII ACNKNALKVC KGNKRKRRSG EGRKRRKKCS VAKTRLTRGR KRRVRNTKKG
301: VDEDDDDFVD DCLPARKKAK TKSSRPRPRR RCTVPSDSDV ASSGESDYEY TISEEEREQI REAGSLLKSS VNHASSIRQT TVNKDLPQLR KSPVKKGEKK
401: VELVKRDVIK NVCGICLSEE DMRRLKGTLD CCSHYFCFTC IMEWSKVESR CPLCKQRFRT ISKPARSTPG VDLREVVIPV PERDQVYQPT EEELRSYLDP
501: YENIICTECH QGDDDGLMLL CDLCDSSAHT YCVGLGREVP EGNWYCEGCR PVALGSASSQ THIISEQQRG SGFYSRPSPL VVSGQYQDVS LIVSPRTPFF
601: NGENLFSPRI PNGDAQGSSP SGLGATTLSR RRTLHRHIQN IINGDRLINM GARTGGTSSD GFVTTQIGHG RTIDPSQPVA SQETGISLYA ISEERLPNNN
701: SLISAHDPEL LSPKLDEFGS EEAFRRLSNN TFLGERPIDL GFHHGLAQGD PLVSNQQRLH SHMPNTMSSM AGERLQERVK AHLKNLSSQN DLGQTTFDEI
801: STCSIHTILA ACGLEHESSE VHLVPPPVTC THHHMTPGSS SSSSSGSSLM KGCCYSCFDS FVEDVVKMIL DTRQPHWLSL GLH
101: TGCKSRKTNQ VVVSDNEDVD LDDADDEDDE IRNSRNAVGK SGSLDGEKHQ RIGLGKRRRV FYEIEDEDGD YPEEDGDEEE ERDVENVDSN SLHDGEDGKM
201: ALEEQDNVSH ETEKEDDGDY EDEDEDDDGD EDFTADEDVS LDEEEEEEII ACNKNALKVC KGNKRKRRSG EGRKRRKKCS VAKTRLTRGR KRRVRNTKKG
301: VDEDDDDFVD DCLPARKKAK TKSSRPRPRR RCTVPSDSDV ASSGESDYEY TISEEEREQI REAGSLLKSS VNHASSIRQT TVNKDLPQLR KSPVKKGEKK
401: VELVKRDVIK NVCGICLSEE DMRRLKGTLD CCSHYFCFTC IMEWSKVESR CPLCKQRFRT ISKPARSTPG VDLREVVIPV PERDQVYQPT EEELRSYLDP
501: YENIICTECH QGDDDGLMLL CDLCDSSAHT YCVGLGREVP EGNWYCEGCR PVALGSASSQ THIISEQQRG SGFYSRPSPL VVSGQYQDVS LIVSPRTPFF
601: NGENLFSPRI PNGDAQGSSP SGLGATTLSR RRTLHRHIQN IINGDRLINM GARTGGTSSD GFVTTQIGHG RTIDPSQPVA SQETGISLYA ISEERLPNNN
701: SLISAHDPEL LSPKLDEFGS EEAFRRLSNN TFLGERPIDL GFHHGLAQGD PLVSNQQRLH SHMPNTMSSM AGERLQERVK AHLKNLSSQN DLGQTTFDEI
801: STCSIHTILA ACGLEHESSE VHLVPPPVTC THHHMTPGSS SSSSSGSSLM KGCCYSCFDS FVEDVVKMIL DTRQPHWLSL GLH
Arabidopsis Description
F18C1.6 protein [Source:UniProtKB/TrEMBL;Acc:Q9M9X2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.