Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G186500.1 | Wheat | nucleus | 92.8 | 93.55 |
| TraesCS4A01G117900.1 | Wheat | nucleus | 88.8 | 89.21 |
| HORVU4Hr1G054580.2 | Barley | nucleus, plastid | 79.89 | 75.24 |
| Os03t0302200-01 | Rice | nucleus | 38.63 | 42.3 |
| OQU92733 | Sorghum | nucleus | 34.74 | 37.67 |
| Zm00001d047676_P002 | Maize | nucleus | 34.74 | 29.2 |
| GSMUA_Achr11P... | Banana | nucleus | 25.14 | 28.28 |
| GSMUA_Achr10P... | Banana | nucleus | 18.29 | 28.22 |
| TraesCS2D01G092600.1 | Wheat | nucleus | 27.2 | 27.45 |
| Bra001159.1-P | Field mustard | nucleus | 14.4 | 26.36 |
| VIT_14s0060g01560.t01 | Wine grape | nucleus | 21.71 | 25.92 |
| KRH33855 | Soybean | nucleus | 22.63 | 25.06 |
| CDY14653 | Canola | nucleus | 18.29 | 24.24 |
| KRG92939 | Soybean | nucleus | 22.4 | 22.84 |
| CDY05191 | Canola | nucleus | 20.0 | 21.53 |
| AT3G05670.2 | Thale cress | nucleus | 21.49 | 21.29 |
| CDX74135 | Canola | nucleus | 20.91 | 21.28 |
| Solyc01g100130.2.1 | Tomato | nucleus | 20.91 | 19.78 |
| PGSC0003DMT400063611 | Potato | nucleus | 21.37 | 19.7 |
| CDY27748 | Canola | cytosol | 6.4 | 15.69 |
| Bra039418.1-P | Field mustard | nucleus | 6.17 | 15.17 |
| TraesCS7D01G214800.1 | Wheat | nucleus | 10.63 | 9.85 |
| TraesCS3D01G287700.1 | Wheat | nucleus | 7.66 | 5.23 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.2 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:IPR019787 | PFAM:PF00628 |
| PFAM:PF13639 | ScanProsite:PS00518 | PFscan:PS50016 | PFscan:PS50089 | PANTHER:PTHR22937 | PANTHER:PTHR22937:SF77 |
| SMART:SM00184 | SMART:SM00249 | SUPFAM:SSF57850 | SUPFAM:SSF57903 | EnsemblPlantsGene:TraesCS4D01G187800 | EnsemblPlants:TraesCS4D01G187800.1 |
| InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD | InterPro:Znf_PHD-finger | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_RING_CS |
| TIGR:cd16574 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr4D:-:326973442..326977873
Molecular Weight (calculated)
99059.4 Da
IEP (calculated)
4.722
GRAVY (calculated)
-1.086
Length
875 amino acids
Sequence
(BLAST)
(BLAST)
001: MGAGEGGGGG RRRRKLEGDD GDDSDEEYVL EEEEDEEEID ELEYGHGGRD AASSSAGEEG GGSDAEYEVD DEDEEEETPR PKRPVKRKAN PAPARSRRRR
101: YEDDDDYSEE LEVDDEIGDY QEDLDEEEEP RGSNCETKCG GRSQKAKMPP VAQRSNRPMH AEEEDMDFDP DLDEGGGDED TDFDPDLEGD DDEFEDDEEE
201: ELGVSHTRTI PRLKNTPASK QRRGKKKKNS NTSKVSKRKF RKPAPVRQRR KRSVIEHYED DDDDFIVEDE LVKVNRNSRK KARFGRQVEV DRPVPVAEAD
301: IWPAIDSDSS EFEFGTSEDE PEGEPVRAAV RKGRKRRGVS GSSSDSEFHV SDKELSDVRE EEVKTKKRVR VLQSSSDSEF HVSGKELSDV REEEVKTKKR
401: VRVLQSSSDS EFHISDKELS DVREEEVKRK KRTCVLQSSS DSEFHASDKE LGDNRIEEAR RKKRLLISQS SSDSEFHVSD KDVRDLGEAK SLVAQPMLSV
501: SPRRLSFTRN GWDKGKEKKE LVDAGKPWCG ICLSEDQRTT LQGVLNCCSH YFCFACIMEW SNVESRCPLC KRRFTTITKS SKVDLDLELK KSVIKVEERD
601: QVYQPTEEEI RRWLDPYENL MCIECNQGGE DSLMLLCDIC DSSAHTYCVG LGREVPEGNW YCGGCRLSGE GSTHPRSLTN SNSAQLGMTV PISTFGRSLS
701: INTWQTFQGF DLNASPREIP RQNIHADSRA STLGVSTPTG RLATLSRRRE WMHILLDRQR LVISQDTGHD GVQHSGYAPR ADPDHRNFCA SSGSNSLQHN
801: DFLPRIEPNR RNFSSPWEAN SSQTLLDDIR DQHGCFSSVQ AQRNSTPCLF ADGNNFQQTE SVNSNVKHMC SISPH
101: YEDDDDYSEE LEVDDEIGDY QEDLDEEEEP RGSNCETKCG GRSQKAKMPP VAQRSNRPMH AEEEDMDFDP DLDEGGGDED TDFDPDLEGD DDEFEDDEEE
201: ELGVSHTRTI PRLKNTPASK QRRGKKKKNS NTSKVSKRKF RKPAPVRQRR KRSVIEHYED DDDDFIVEDE LVKVNRNSRK KARFGRQVEV DRPVPVAEAD
301: IWPAIDSDSS EFEFGTSEDE PEGEPVRAAV RKGRKRRGVS GSSSDSEFHV SDKELSDVRE EEVKTKKRVR VLQSSSDSEF HVSGKELSDV REEEVKTKKR
401: VRVLQSSSDS EFHISDKELS DVREEEVKRK KRTCVLQSSS DSEFHASDKE LGDNRIEEAR RKKRLLISQS SSDSEFHVSD KDVRDLGEAK SLVAQPMLSV
501: SPRRLSFTRN GWDKGKEKKE LVDAGKPWCG ICLSEDQRTT LQGVLNCCSH YFCFACIMEW SNVESRCPLC KRRFTTITKS SKVDLDLELK KSVIKVEERD
601: QVYQPTEEEI RRWLDPYENL MCIECNQGGE DSLMLLCDIC DSSAHTYCVG LGREVPEGNW YCGGCRLSGE GSTHPRSLTN SNSAQLGMTV PISTFGRSLS
701: INTWQTFQGF DLNASPREIP RQNIHADSRA STLGVSTPTG RLATLSRRRE WMHILLDRQR LVISQDTGHD GVQHSGYAPR ADPDHRNFCA SSGSNSLQHN
801: DFLPRIEPNR RNFSSPWEAN SSQTLLDDIR DQHGCFSSVQ AQRNSTPCLF ADGNNFQQTE SVNSNVKHMC SISPH
001: MGKRNTSWAR NSNRKVRSKD KGSDESDEDY VISDEDEEES EADLKEEYAS SVDGEPSFDG FNGSDAVEDE ELDEVEEEDV MLRNVEWPKV KTGPRGNRKI
101: TGCKSRKTNQ VVVSDNEDVD LDDADDEDDE IRNSRNAVGK SGSLDGEKHQ RIGLGKRRRV FYEIEDEDGD YPEEDGDEEE ERDVENVDSN SLHDGEDGKM
201: ALEEQDNVSH ETEKEDDGDY EDEDEDDDGD EDFTADEDVS LDEEEEEEII ACNKNALKVC KGNKRKRRSG EGRKRRKKCS VAKTRLTRGR KRRVRNTKKG
301: VDEDDDDFVD DCLPARKKAK TKSSRPRPRR RCTVPSDSDV ASSGESDYEY TISEEEREQI REAGSLLKSS VNHASSIRQT TVNKDLPQLR KSPVKKGEKK
401: VELVKRDVIK NVCGICLSEE DMRRLKGTLD CCSHYFCFTC IMEWSKVESR CPLCKQRFRT ISKPARSTPG VDLREVVIPV PERDQVYQPT EEELRSYLDP
501: YENIICTECH QGDDDGLMLL CDLCDSSAHT YCVGLGREVP EGNWYCEGCR PVALGSASSQ THIISEQQRG SGFYSRPSPL VVSGQYQDVS LIVSPRTPFF
601: NGENLFSPRI PNGDAQGSSP SGLGATTLSR RRTLHRHIQN IINGDRLINM GARTGGTSSD GFVTTQIGHG RTIDPSQPVA SQETGISLYA ISEERLPNNN
701: SLISAHDPEL LSPKLDEFGS EEAFRRLSNN TFLGERPIDL GFHHGLAQGD PLVSNQQRLH SHMPNTMSSM AGERLQERVK AHLKNLSSQN DLGQTTFDEI
801: STCSIHTILA ACGLEHESSE VHLVPPPVTC THHHMTPGSS SSSSSGSSLM KGCCYSCFDS FVEDVVKMIL DTRQPHWLSL GLH
101: TGCKSRKTNQ VVVSDNEDVD LDDADDEDDE IRNSRNAVGK SGSLDGEKHQ RIGLGKRRRV FYEIEDEDGD YPEEDGDEEE ERDVENVDSN SLHDGEDGKM
201: ALEEQDNVSH ETEKEDDGDY EDEDEDDDGD EDFTADEDVS LDEEEEEEII ACNKNALKVC KGNKRKRRSG EGRKRRKKCS VAKTRLTRGR KRRVRNTKKG
301: VDEDDDDFVD DCLPARKKAK TKSSRPRPRR RCTVPSDSDV ASSGESDYEY TISEEEREQI REAGSLLKSS VNHASSIRQT TVNKDLPQLR KSPVKKGEKK
401: VELVKRDVIK NVCGICLSEE DMRRLKGTLD CCSHYFCFTC IMEWSKVESR CPLCKQRFRT ISKPARSTPG VDLREVVIPV PERDQVYQPT EEELRSYLDP
501: YENIICTECH QGDDDGLMLL CDLCDSSAHT YCVGLGREVP EGNWYCEGCR PVALGSASSQ THIISEQQRG SGFYSRPSPL VVSGQYQDVS LIVSPRTPFF
601: NGENLFSPRI PNGDAQGSSP SGLGATTLSR RRTLHRHIQN IINGDRLINM GARTGGTSSD GFVTTQIGHG RTIDPSQPVA SQETGISLYA ISEERLPNNN
701: SLISAHDPEL LSPKLDEFGS EEAFRRLSNN TFLGERPIDL GFHHGLAQGD PLVSNQQRLH SHMPNTMSSM AGERLQERVK AHLKNLSSQN DLGQTTFDEI
801: STCSIHTILA ACGLEHESSE VHLVPPPVTC THHHMTPGSS SSSSSGSSLM KGCCYSCFDS FVEDVVKMIL DTRQPHWLSL GLH
Arabidopsis Description
F18C1.6 protein [Source:UniProtKB/TrEMBL;Acc:Q9M9X2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.