Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU92733 | Sorghum | nucleus | 43.42 | 56.01 |
| Os03t0302200-01 | Rice | nucleus | 31.51 | 41.05 |
| TraesCS4A01G117900.1 | Wheat | nucleus | 29.97 | 35.82 |
| TraesCS4B01G186500.1 | Wheat | nucleus | 29.49 | 35.37 |
| TraesCS4D01G187800.1 | Wheat | nucleus | 29.2 | 34.74 |
| HORVU4Hr1G054580.2 | Barley | nucleus, plastid | 29.97 | 33.58 |
| GSMUA_Achr10P... | Banana | nucleus | 16.14 | 29.63 |
| GSMUA_Achr11P... | Banana | nucleus | 20.65 | 27.64 |
| KRH33855 | Soybean | nucleus | 19.31 | 25.44 |
| Bra001159.1-P | Field mustard | nucleus | 11.43 | 24.9 |
| VIT_14s0060g01560.t01 | Wine grape | nucleus | 17.1 | 24.28 |
| CDY14653 | Canola | nucleus | 14.79 | 23.33 |
| KRG92939 | Soybean | nucleus | 19.12 | 23.19 |
| CDY05191 | Canola | nucleus | 16.62 | 21.28 |
| Solyc01g100130.2.1 | Tomato | nucleus | 18.83 | 21.19 |
| PGSC0003DMT400063611 | Potato | nucleus | 19.31 | 21.18 |
| CDX74135 | Canola | nucleus | 17.1 | 20.7 |
| AT3G05670.2 | Thale cress | nucleus | 17.29 | 20.39 |
| CDY27748 | Canola | cytosol | 5.19 | 15.13 |
| Bra039418.1-P | Field mustard | nucleus | 5.09 | 14.89 |
| Zm00001d045755_P001 | Maize | nucleus | 8.84 | 12.55 |
| Zm00001d053989_P003 | Maize | plastid | 5.19 | 4.12 |
Protein Annotations
| EntrezGene:100383513 | MapMan:13.6.2.5 | Gene3D:3.30.40.10 | UniProt:A0A1D6PC95 | ProteinID:AQL07252.1 | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005777 | GO:GO:0005779 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016043 |
| GO:GO:0016559 | GO:GO:0046872 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:IPR019787 | InterPro:PEX11 |
| PFAM:PF00628 | PFAM:PF05648 | PFAM:PF13639 | ScanProsite:PS00518 | PFscan:PS50016 | PFscan:PS50089 |
| PANTHER:PTHR22937 | PANTHER:PTHR22937:SF77 | SMART:SM00184 | SMART:SM00249 | SUPFAM:SSF57850 | SUPFAM:SSF57903 |
| UniParc:UPI000843B060 | EnsemblPlantsGene:Zm00001d047676 | EnsemblPlants:Zm00001d047676_P002 | EnsemblPlants:Zm00001d047676_T002 | InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD |
| InterPro:Znf_PHD-finger | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_RING_CS | SEG:seg | : |
Description
PHD-transcription factor 36RING/U-box protein
Coordinates
chr9:-:139044557..139053878
Molecular Weight (calculated)
117398.0 Da
IEP (calculated)
4.808
GRAVY (calculated)
-1.059
Length
1041 amino acids
Sequence
(BLAST)
(BLAST)
0001: MRPRQRFDRR IKHAIAASSV CGPAPVFYRL DAKVNAGRHG LHRAPQSYAG RTPVRGRGRR SPTGPRLPRP PRRRRQAPQD LPLRHAPRTR RWGPGASARL
0101: KSFESSVVLS RKGFRLGKFV QSLRAHPHLP PALALLAYGS EGVYYFVEQF VWLAKAGILP AHLLAKLLLK PEGMGTGEGS PPARRGISGR RRRWPDEDDD
0201: EYVLEEEEEE DYVEELSASS AGEEGVDSDA EYQEAEEEDE IEKPRPKRPA KGITSSAGER GLDSDAEYQE AEEDDEIEPP RLKRPAKGST SSAGEEGLDS
0301: DAEYQEAEED EMETPRPKRP AKDSTSSAGE DGLDSDAEYQ EAEEEDDDEI ETPRPKRRAK GSNRVRKGKV DLAAARSRRR KYEEDEDYEE EVDEDDEVEE
0401: EYHDDLEEVE EEEEVAPQRP KSIVKCGARG RNVKLSLAAK RSHQRKQEDD EDMDFDPELD DEEVEIDEDI DFDPDVDGDE EDEYQDEEEE ELVPARARKV
0501: TVKNPVKRKS ISKRRTPKKK KKNRGSKVSR RKGASAKVKK SAPVRRRRKR SVIDDYEDED VDDDDDDDFI VDDEVIVNRH PKKKARIGSG RETVVDPQVS
0601: IEEETWPDLE SDSSDFEFAT SDEEPNNVET PVAEQTTVRK GRKKRISESE SSSDSEFVVS GKELEELREP EPPKAAPNLH VSLRRICITR HGEGKGKEKQ
0701: EQEEAGKPIC GICLSEELRA TVQGVLNCCS HYFCFACIME WSRVESRCPL CKQRFTTITK SSKVDLGLGV RKAVVKVEER DQVYQPTEEE IRRWLDPYEN
0801: VVCIECNQGG DDNLMLLCDI CDSSAHTYCV GLGREVPEGN WYCGGCRLGD EGPSYTGIQR TVAYERQNYR SHVGSSVSFG MAVPGGTFER PSSINPRHSF
0901: QGIDLNLSPR EFPGESHPAE SQVSTDSVST PTGRAGRTIS GRRELQRYIQ SLFRPSLPSR PDTYHNIAQN SGGVSRNEPN RWNFPSSSEA NTSQNLPDGI
1001: QNHHSDLPFV QAHSNFAPFM SPDGDDFQQI EGVKSNLRNM Q
0101: KSFESSVVLS RKGFRLGKFV QSLRAHPHLP PALALLAYGS EGVYYFVEQF VWLAKAGILP AHLLAKLLLK PEGMGTGEGS PPARRGISGR RRRWPDEDDD
0201: EYVLEEEEEE DYVEELSASS AGEEGVDSDA EYQEAEEEDE IEKPRPKRPA KGITSSAGER GLDSDAEYQE AEEDDEIEPP RLKRPAKGST SSAGEEGLDS
0301: DAEYQEAEED EMETPRPKRP AKDSTSSAGE DGLDSDAEYQ EAEEEDDDEI ETPRPKRRAK GSNRVRKGKV DLAAARSRRR KYEEDEDYEE EVDEDDEVEE
0401: EYHDDLEEVE EEEEVAPQRP KSIVKCGARG RNVKLSLAAK RSHQRKQEDD EDMDFDPELD DEEVEIDEDI DFDPDVDGDE EDEYQDEEEE ELVPARARKV
0501: TVKNPVKRKS ISKRRTPKKK KKNRGSKVSR RKGASAKVKK SAPVRRRRKR SVIDDYEDED VDDDDDDDFI VDDEVIVNRH PKKKARIGSG RETVVDPQVS
0601: IEEETWPDLE SDSSDFEFAT SDEEPNNVET PVAEQTTVRK GRKKRISESE SSSDSEFVVS GKELEELREP EPPKAAPNLH VSLRRICITR HGEGKGKEKQ
0701: EQEEAGKPIC GICLSEELRA TVQGVLNCCS HYFCFACIME WSRVESRCPL CKQRFTTITK SSKVDLGLGV RKAVVKVEER DQVYQPTEEE IRRWLDPYEN
0801: VVCIECNQGG DDNLMLLCDI CDSSAHTYCV GLGREVPEGN WYCGGCRLGD EGPSYTGIQR TVAYERQNYR SHVGSSVSFG MAVPGGTFER PSSINPRHSF
0901: QGIDLNLSPR EFPGESHPAE SQVSTDSVST PTGRAGRTIS GRRELQRYIQ SLFRPSLPSR PDTYHNIAQN SGGVSRNEPN RWNFPSSSEA NTSQNLPDGI
1001: QNHHSDLPFV QAHSNFAPFM SPDGDDFQQI EGVKSNLRNM Q
001: MGKRNTSWAR NSNRKVRSKD KGSDESDEDY VISDEDEEES EADLKEEYAS SVDGEPSFDG FNGSDAVEDE ELDEVEEEDV MLRNVEWPKV KTGPRGNRKI
101: TGCKSRKTNQ VVVSDNEDVD LDDADDEDDE IRNSRNAVGK SGSLDGEKHQ RIGLGKRRRV FYEIEDEDGD YPEEDGDEEE ERDVENVDSN SLHDGEDGKM
201: ALEEQDNVSH ETEKEDDGDY EDEDEDDDGD EDFTADEDVS LDEEEEEEII ACNKNALKVC KGNKRKRRSG EGRKRRKKCS VAKTRLTRGR KRRVRNTKKG
301: VDEDDDDFVD DCLPARKKAK TKSSRPRPRR RCTVPSDSDV ASSGESDYEY TISEEEREQI REAGSLLKSS VNHASSIRQT TVNKDLPQLR KSPVKKGEKK
401: VELVKRDVIK NVCGICLSEE DMRRLKGTLD CCSHYFCFTC IMEWSKVESR CPLCKQRFRT ISKPARSTPG VDLREVVIPV PERDQVYQPT EEELRSYLDP
501: YENIICTECH QGDDDGLMLL CDLCDSSAHT YCVGLGREVP EGNWYCEGCR PVALGSASSQ THIISEQQRG SGFYSRPSPL VVSGQYQDVS LIVSPRTPFF
601: NGENLFSPRI PNGDAQGSSP SGLGATTLSR RRTLHRHIQN IINGDRLINM GARTGGTSSD GFVTTQIGHG RTIDPSQPVA SQETGISLYA ISEERLPNNN
701: SLISAHDPEL LSPKLDEFGS EEAFRRLSNN TFLGERPIDL GFHHGLAQGD PLVSNQQRLH SHMPNTMSSM AGERLQERVK AHLKNLSSQN DLGQTTFDEI
801: STCSIHTILA ACGLEHESSE VHLVPPPVTC THHHMTPGSS SSSSSGSSLM KGCCYSCFDS FVEDVVKMIL DTRQPHWLSL GLH
101: TGCKSRKTNQ VVVSDNEDVD LDDADDEDDE IRNSRNAVGK SGSLDGEKHQ RIGLGKRRRV FYEIEDEDGD YPEEDGDEEE ERDVENVDSN SLHDGEDGKM
201: ALEEQDNVSH ETEKEDDGDY EDEDEDDDGD EDFTADEDVS LDEEEEEEII ACNKNALKVC KGNKRKRRSG EGRKRRKKCS VAKTRLTRGR KRRVRNTKKG
301: VDEDDDDFVD DCLPARKKAK TKSSRPRPRR RCTVPSDSDV ASSGESDYEY TISEEEREQI REAGSLLKSS VNHASSIRQT TVNKDLPQLR KSPVKKGEKK
401: VELVKRDVIK NVCGICLSEE DMRRLKGTLD CCSHYFCFTC IMEWSKVESR CPLCKQRFRT ISKPARSTPG VDLREVVIPV PERDQVYQPT EEELRSYLDP
501: YENIICTECH QGDDDGLMLL CDLCDSSAHT YCVGLGREVP EGNWYCEGCR PVALGSASSQ THIISEQQRG SGFYSRPSPL VVSGQYQDVS LIVSPRTPFF
601: NGENLFSPRI PNGDAQGSSP SGLGATTLSR RRTLHRHIQN IINGDRLINM GARTGGTSSD GFVTTQIGHG RTIDPSQPVA SQETGISLYA ISEERLPNNN
701: SLISAHDPEL LSPKLDEFGS EEAFRRLSNN TFLGERPIDL GFHHGLAQGD PLVSNQQRLH SHMPNTMSSM AGERLQERVK AHLKNLSSQN DLGQTTFDEI
801: STCSIHTILA ACGLEHESSE VHLVPPPVTC THHHMTPGSS SSSSSGSSLM KGCCYSCFDS FVEDVVKMIL DTRQPHWLSL GLH
Arabidopsis Description
F18C1.6 protein [Source:UniProtKB/TrEMBL;Acc:Q9M9X2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.