Factsheet for GSMUA_Achr10P01300_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra001159.1-P	Field mustard	nucleus	20.46	24.27
GSMUA_Achr11P...	Banana	nucleus	32.1	23.39
Os07t0690300-01	Rice	nucleus	21.34	23.05
CDY14653	Canola	nucleus	25.57	21.97
KRH33855	Soybean	nucleus	29.81	21.39
OQU92733	Sorghum	nucleus	29.63	20.82
VIT_14s0060g01560.t01	Wine grape	nucleus	26.63	20.6
Os03t0302200-01	Rice	nucleus	27.51	19.52
KRG92939	Soybean	nucleus	29.45	19.46
AT3G05670.2	Thale cress	nucleus	29.81	19.14
CDX74135	Canola	nucleus	28.92	19.07
CDY05191	Canola	nucleus	27.16	18.94
TraesCS4B01G186500.1	Wheat	nucleus	28.75	18.78
TraesCS4D01G187800.1	Wheat	nucleus	28.22	18.29
TraesCS4A01G117900.1	Wheat	nucleus	27.87	18.14
Solyc01g100130.2.1	Tomato	nucleus	29.28	17.95
HORVU2Hr1G015670.1	Barley	cytosol	20.99	17.87
TraesCS2D01G092600.1	Wheat	nucleus	26.98	17.65
PGSC0003DMT400063611	Potato	nucleus	29.1	17.39
HORVU4Hr1G054580.2	Barley	nucleus, plastid	28.22	17.22
Zm00001d047676_P002	Maize	nucleus	29.63	16.14
Bra039418.1-P	Field mustard	nucleus	9.17	14.61
CDY27748	Canola	cytosol	9.17	14.57
TraesCS2A01G094000.1	Wheat	nucleus	29.63	13.6
TraesCS2B01G108800.1	Wheat	nucleus	29.28	13.41
GSMUA_Achr3P10630_001	Banana	nucleus	15.17	12.72
GSMUA_Achr3P31620_001	Banana	nucleus	10.23	4.35

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872
EnsemblPlantsGene:GSMUA_Achr10G01300_001	EnsemblPlants:GSMUA_Achr10P01300_001	EnsemblPlants:GSMUA_Achr10T01300_001	InterPro:IPR001841	InterPro:IPR013083	InterPro:IPR019787
UniProt:M0REF7	PFAM:PF00628	PFAM:PF13639	ScanProsite:PS00518	PFscan:PS50016	PFscan:PS50089
PANTHER:PTHR22937	PANTHER:PTHR22937:SF77	SMART:SM00184	SMART:SM00249	SUPFAM:SSF57850	SUPFAM:SSF57903
UniParc:UPI0002953F1F	InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD	InterPro:Znf_PHD-finger	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
InterPro:Znf_RING_CS	SEG:seg	:	:	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr10G01300_001]

Coordinates

chr10:-:2896038..2899164

Molecular Weight (calculated)

64151.6 Da

IEP (calculated)

4.456

GRAVY (calculated)

-0.950

Length

567 amino acids

Sequence
(BLAST)

001: MGKSRGVSYK KAHREPKRRR DASDDEEDKE YLFGAEDEDV EEEGFSESLD ADATEEEFEF GESTCGSEEE REIDYDDEEE DQDEAVAVEE EVESPRSMPW
101: NGRAQRSGAL VDDEEEETKD WFRSCRRNLV ALDYAEEEED DDDHDEDFLP DDGGDDSHDE EEVSLASGKK GDLKRRTKKR KSRVFKQKRS EKRIRRRKSD
201: DDDDDSDFPY SKEGLLVKNR IAFHKERNKL KNVKRRKRSL VISESSSDSD YMIFELDDLV VGGAINPPKP INTTEDEENG KEKEGDELQK QICGICLAEE
301: RTRTIQGELD CCAHFFCFKC IMEWSKVESR CPVCKRRFST ITKSSRSDPG FGMRKVVSIQ VRNQVYQPSE EEIRQMLDPY GSVVCTECQQ DGDDGLMLLC
401: DICDSCAHTY CVGLGREVPE GSWYCDCCRS ATNGSSTSQN QGTVTDERAR NGECLGLGTE TEVAEHIHAT SYFQQSISLP PLVAVQRIDL NAPPTLEDDH
501: GATLQDAGGV ASTLSGRRAI HHRICILLSN SRRRPMFSPI GLLTDKVESD VLTQKTEESG HHLHSAG

Best Arabidopsis Sequence Match ( AT3G05670.3 )
(BLAST)

001: MGKRNTSWAR NSNRKVRSKD KGSDESDEDY VISDEDEEES EADLKEEYAS SVDGEPSFDG FNGSDAVEDE ELDEVEEEDV MLRNVEWPKV KTGPRGNRKI
101: TGCKSRKTNQ VVVSDNEDVD LDDADDEDDE IRNSRNAVGK SGSLDGEKHQ RIGLGKRRRV FYEIEDEDGD YPEEDGDEEE ERDVENVDSN SLHDGEDGKM
201: ALEEQDNVSH ETEKEDDGDY EDEDEDDDGD EDFTADEDVS LDEEEEEEII ACNKNALKVC KGNKRKRRSG EGRKRRKKCS VAKTRLTRGR KRRVRNTKKG
301: VDEDDDDFVD DCLPARKKAK TKSSRPRPRR RCTVPSDSDV ASSGESDYEY TISEEEREQI REAGSLLKSS VNHASSIRQT TVNKDLPQLR KSPVKKGEKK
401: VELVKRDVIK NVCGICLSEE DMRRLKGTLD CCSHYFCFTC IMEWSKVESR CPLCKQRFRT ISKPARSTPG VDLREVVIPV PERDQVYQPT EEELRSYLDP
501: YENIICTECH QGDDDGLMLL CDLCDSSAHT YCVGLGREVP EGNWYCEGCR PVALGSASSQ THIISEQQRG SGFYSRPSPL VVSGQYQDVS LIVSPRTPFF
601: NGENLFSPRI PNGDAQGSSP SGLGATTLSR RRTLHRHIQN IINGDRLINM GARTGGTSSD GFVTTQIGHG RTIDPSQPVA SQETGISLYA ISEERLPNNN
701: SLISAHDPEL LSPKLDEFGS EEAFRRLSNN TFLGERPIDL GFHHGLAQGD PLVSNQQRLH SHMPNTMSSM AGERLQERVK AHLKNLSSQN DLGQTTFDEI
801: STCSIHTILA ACGLEHESSE VHLVPPPVTC THHHMTPGSS SSSSSGSSLM KGCCYSCFDS FVEDVVKMIL DTRQPHWLSL GLH

Arabidopsis Description

F18C1.6 protein [Source:UniProtKB/TrEMBL;Acc:Q9M9X2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.