Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G108800.1 | Wheat | nucleus | 85.34 | 85.14 |
| TraesCS2D01G092600.1 | Wheat | nucleus | 55.63 | 79.24 |
| HORVU2Hr1G015670.1 | Barley | cytosol | 32.31 | 59.91 |
| Os07t0690300-01 | Rice | nucleus | 19.11 | 44.95 |
| GSMUA_Achr11P... | Banana | nucleus | 22.19 | 35.22 |
| TraesCS4A01G117900.1 | Wheat | nucleus | 22.67 | 32.15 |
| Bra001159.1-P | Field mustard | nucleus | 12.23 | 31.59 |
| GSMUA_Achr10P... | Banana | nucleus | 13.6 | 29.63 |
| VIT_14s0060g01560.t01 | Wine grape | nucleus | 16.6 | 27.97 |
| CDY14653 | Canola | nucleus | 14.9 | 27.88 |
| KRG92939 | Soybean | nucleus | 18.14 | 26.11 |
| CDY05191 | Canola | nucleus | 16.84 | 25.58 |
| KRH33855 | Soybean | nucleus | 16.28 | 25.44 |
| AT3G05670.2 | Thale cress | nucleus | 17.81 | 24.92 |
| CDX74135 | Canola | nucleus | 17.33 | 24.88 |
| Solyc01g100130.2.1 | Tomato | nucleus | 17.09 | 22.81 |
| PGSC0003DMT400063611 | Potato | nucleus | 17.41 | 22.66 |
| CDY27748 | Canola | cytosol | 6.23 | 21.57 |
| Bra039418.1-P | Field mustard | nucleus | 6.07 | 21.07 |
| TraesCS7A01G212900.1 | Wheat | nucleus | 10.04 | 13.11 |
| TraesCS3A01G287900.3 | Wheat | nucleus | 7.04 | 6.65 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.2 | ncoils:Coil | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:IPR019787 |
| PFAM:PF00628 | PFAM:PF13639 | ScanProsite:PS00518 | PFscan:PS50016 | PFscan:PS50089 | PANTHER:PTHR22937 |
| PANTHER:PTHR22937:SF77 | SMART:SM00184 | SMART:SM00249 | SUPFAM:SSF57850 | SUPFAM:SSF57903 | EnsemblPlantsGene:TraesCS2A01G094000 |
| EnsemblPlants:TraesCS2A01G094000.1 | InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD | InterPro:Znf_PHD-finger | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD |
| InterPro:Znf_RING_CS | TIGR:cd16574 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr2A:+:47906292..47911025
Molecular Weight (calculated)
140385.0 Da
IEP (calculated)
4.169
GRAVY (calculated)
-1.285
Length
1235 amino acids
Sequence
(BLAST)
(BLAST)
0001: MVAGGRAVLR RAKMGGDDDD EYVVDEDEEE EVEEEDDVEY AAAACSDEDA SEEEAEDESD ADFDGDAEEE EEDDEDFEID KPRHRPRRPP RPPPRPRGRG
0101: RKKAKSDDDD DSDADSEEEE EEDFEIDAPR PRRRPARARG RGRKRRRRQE SEQEESDADF EEELEEIETP RPKPRRRARK AKPRDDDDDD DSDADFEEEE
0201: DEDFEIDTPR PRRAPTARSR GRSRKQEEES DAELDGEDEG FEIETPTPRC APTARSRGRA GKQEDESDEE FNGEEDGLGN EEVEVEAPWP KRPATVRFRR
0301: RREEQEIESD ADFKGEEEEV ENELEVETTQ PAMDPSWGRS EEQEDESDAD FKGGEEELEN EELEVETPLS ANFRSGGRNV KEEDELDADF NVVEEEVEDQ
0401: EEDDELEMET PESVKYHSGG RNVKEDELDA DFNVSEEEVE DQEEDEELEI ETPESVKYRS GGRNVKEEDE LDADFNVAEE EVEDQEEDEE LEIETPESVK
0501: YQSGGRNVKE EDELDADFNG AVDEVEDQEE DEELETETLQ PRNLSEARGK GRKVKSTRSS RQRHEDDDDY EEEIEDEDED FDPEVDEDEE DEEEDVEEED
0601: DDLGDYAPTR ATNVRPRNHL AKRKPAAGRQ HRKRKSSSKG KTRNGTSARR RRSKRRVADD YEDDEEEEDD DDFVVKDDVE EEVNYRPRKK AKVGRKTREG
0701: TAEPVAVGEA WPSVESDTSE FEFVTSDEDH AEKETPVAEP ARIKRKKGRR KRGSESDSSS DSDYVISEEE LKDLGVPRPQ EIVPQLPSPP ARRTIAPRRV
0801: DEKGKEPEEA LKQICGICLS EEQRATIQGV LNCCSHYFCF ACILEWSKVE SRCPLCKRRF NTITKSSVAD LGLGLRNAPV RVEKRDQVYQ PTEDEMRRWL
0901: DPYENVVCIE CNQGGDDNLM LLCDICDSSA HTFCVGLGRE VPEGNWYCGG CRSSVEGPSH AQTQDRVVHR GDSNMNTADS SSGSLGRSTS SGVFQRPPPI
1001: NVQPSLQGFD LNLSPIETPE EDKRAESHLS AEPVSTPTGR HATLDRRRAL NRRIRILLFR PRTATNAWQN SIQQDRSAPA TEQNQRNACT STDVSPSCSR
1101: ADFMQSQQSS SHFVQSASNL NQCTDEGGSN FREVANAKDQ LIPIVKKSIK HICARSPLDQ SSFTNVARRA THTILALSGI AHNKDRVVST PFPFPSHCCH
1201: ACDGREPAFL MRTICSSCFN SFVGDVVSHI ANMFS
0101: RKKAKSDDDD DSDADSEEEE EEDFEIDAPR PRRRPARARG RGRKRRRRQE SEQEESDADF EEELEEIETP RPKPRRRARK AKPRDDDDDD DSDADFEEEE
0201: DEDFEIDTPR PRRAPTARSR GRSRKQEEES DAELDGEDEG FEIETPTPRC APTARSRGRA GKQEDESDEE FNGEEDGLGN EEVEVEAPWP KRPATVRFRR
0301: RREEQEIESD ADFKGEEEEV ENELEVETTQ PAMDPSWGRS EEQEDESDAD FKGGEEELEN EELEVETPLS ANFRSGGRNV KEEDELDADF NVVEEEVEDQ
0401: EEDDELEMET PESVKYHSGG RNVKEDELDA DFNVSEEEVE DQEEDEELEI ETPESVKYRS GGRNVKEEDE LDADFNVAEE EVEDQEEDEE LEIETPESVK
0501: YQSGGRNVKE EDELDADFNG AVDEVEDQEE DEELETETLQ PRNLSEARGK GRKVKSTRSS RQRHEDDDDY EEEIEDEDED FDPEVDEDEE DEEEDVEEED
0601: DDLGDYAPTR ATNVRPRNHL AKRKPAAGRQ HRKRKSSSKG KTRNGTSARR RRSKRRVADD YEDDEEEEDD DDFVVKDDVE EEVNYRPRKK AKVGRKTREG
0701: TAEPVAVGEA WPSVESDTSE FEFVTSDEDH AEKETPVAEP ARIKRKKGRR KRGSESDSSS DSDYVISEEE LKDLGVPRPQ EIVPQLPSPP ARRTIAPRRV
0801: DEKGKEPEEA LKQICGICLS EEQRATIQGV LNCCSHYFCF ACILEWSKVE SRCPLCKRRF NTITKSSVAD LGLGLRNAPV RVEKRDQVYQ PTEDEMRRWL
0901: DPYENVVCIE CNQGGDDNLM LLCDICDSSA HTFCVGLGRE VPEGNWYCGG CRSSVEGPSH AQTQDRVVHR GDSNMNTADS SSGSLGRSTS SGVFQRPPPI
1001: NVQPSLQGFD LNLSPIETPE EDKRAESHLS AEPVSTPTGR HATLDRRRAL NRRIRILLFR PRTATNAWQN SIQQDRSAPA TEQNQRNACT STDVSPSCSR
1101: ADFMQSQQSS SHFVQSASNL NQCTDEGGSN FREVANAKDQ LIPIVKKSIK HICARSPLDQ SSFTNVARRA THTILALSGI AHNKDRVVST PFPFPSHCCH
1201: ACDGREPAFL MRTICSSCFN SFVGDVVSHI ANMFS
001: MGKRNTSWAR NSNRKVRSKD KGSDESDEDY VISDEDEEES EADLKEEYAS SVDGEPSFDG FNGSDAVEDE ELDEVEEEDV MLRNVEWPKV KTGPRGNRKI
101: TGCKSRKTNQ VVVSDNEDVD LDDADDEDDE IRNSRNAVGK SGSLDGEKHQ RIGLGKRRRV FYEIEDEDGD YPEEDGDEEE ERDVENVDSN SLHDGEDGKM
201: ALEEQDNVSH ETEKEDDGDY EDEDEDDDGD EDFTADEDVS LDEEEEEEII ACNKNALKVC KGNKRKRRSG EGRKRRKKCS VAKTRLTRGR KRRVRNTKKG
301: VDEDDDDFVD DCLPARKKAK TKSSRPRPRR RCTVPSDSDV ASSGESDYEY TISEEEREQI REAGSLLKSS VNHASSIRQT TVNKDLPQLR KSPVKKGEKK
401: VELVKRDVIK NVCGICLSEE DMRRLKGTLD CCSHYFCFTC IMEWSKVESR CPLCKQRFRT ISKPARSTPG VDLREVVIPV PERDQVYQPT EEELRSYLDP
501: YENIICTECH QGDDDGLMLL CDLCDSSAHT YCVGLGREVP EGNWYCEGCR PVALGSASSQ THIISEQQRG SGFYSRPSPL VVSGQYQDVS LIVSPRTPFF
601: NGENLFSPRI PNGDAQGSSP SGLGATTLSR RRTLHRHIQN IINGDRLINM GARTGGTSSD GFVTTQIGHG RTIDPSQPVA SQETGISLYA ISEERLPNNN
701: SLISAHDPEL LSPKLDEFGS EEAFRRLSNN TFLGERPIDL GFHHGLAQGD PLVSNQQRLH SHMPNTMSSM AGERLQERVK AHLKNLSSQN DLGQTTFDEI
801: STCSIHTILA ACGLEHESSE VHLVPPPVTC THHHMTPGSS SSSSSGSSLM KGCCYSCFDS FVEDVVKMIL DTRQPHWLSL GLH
101: TGCKSRKTNQ VVVSDNEDVD LDDADDEDDE IRNSRNAVGK SGSLDGEKHQ RIGLGKRRRV FYEIEDEDGD YPEEDGDEEE ERDVENVDSN SLHDGEDGKM
201: ALEEQDNVSH ETEKEDDGDY EDEDEDDDGD EDFTADEDVS LDEEEEEEII ACNKNALKVC KGNKRKRRSG EGRKRRKKCS VAKTRLTRGR KRRVRNTKKG
301: VDEDDDDFVD DCLPARKKAK TKSSRPRPRR RCTVPSDSDV ASSGESDYEY TISEEEREQI REAGSLLKSS VNHASSIRQT TVNKDLPQLR KSPVKKGEKK
401: VELVKRDVIK NVCGICLSEE DMRRLKGTLD CCSHYFCFTC IMEWSKVESR CPLCKQRFRT ISKPARSTPG VDLREVVIPV PERDQVYQPT EEELRSYLDP
501: YENIICTECH QGDDDGLMLL CDLCDSSAHT YCVGLGREVP EGNWYCEGCR PVALGSASSQ THIISEQQRG SGFYSRPSPL VVSGQYQDVS LIVSPRTPFF
601: NGENLFSPRI PNGDAQGSSP SGLGATTLSR RRTLHRHIQN IINGDRLINM GARTGGTSSD GFVTTQIGHG RTIDPSQPVA SQETGISLYA ISEERLPNNN
701: SLISAHDPEL LSPKLDEFGS EEAFRRLSNN TFLGERPIDL GFHHGLAQGD PLVSNQQRLH SHMPNTMSSM AGERLQERVK AHLKNLSSQN DLGQTTFDEI
801: STCSIHTILA ACGLEHESSE VHLVPPPVTC THHHMTPGSS SSSSSGSSLM KGCCYSCFDS FVEDVVKMIL DTRQPHWLSL GLH
Arabidopsis Description
F18C1.6 protein [Source:UniProtKB/TrEMBL;Acc:Q9M9X2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.