Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY27748 | Canola | cytosol | 38.64 | 71.43 |
| CDX74135 | Canola | nucleus | 84.39 | 64.77 |
| CDY05191 | Canola | nucleus | 72.12 | 58.55 |
| AT3G05670.2 | Thale cress | nucleus | 69.24 | 51.76 |
| VIT_14s0060g01560.t01 | Wine grape | nucleus | 40.61 | 36.56 |
| KRG92939 | Soybean | nucleus | 42.12 | 32.4 |
| KRH33855 | Soybean | nucleus | 33.33 | 27.85 |
| GSMUA_Achr11P... | Banana | nucleus | 30.3 | 25.71 |
| GSMUA_Achr10P... | Banana | nucleus | 21.97 | 25.57 |
| Solyc01g100130.2.1 | Tomato | nucleus | 32.58 | 23.24 |
| PGSC0003DMT400063611 | Potato | nucleus | 32.42 | 22.55 |
| HORVU2Hr1G015670.1 | Barley | cytosol | 21.82 | 21.62 |
| Os03t0302200-01 | Rice | nucleus | 25.61 | 21.15 |
| OQU92733 | Sorghum | nucleus | 25.15 | 20.57 |
| TraesCS2D01G092600.1 | Wheat | nucleus | 26.97 | 20.53 |
| Os07t0690300-01 | Rice | nucleus | 15.0 | 18.86 |
| TraesCS4A01G117900.1 | Wheat | nucleus | 24.55 | 18.6 |
| TraesCS4B01G186500.1 | Wheat | nucleus | 24.09 | 18.32 |
| TraesCS4D01G187800.1 | Wheat | nucleus | 24.24 | 18.29 |
| HORVU4Hr1G054580.2 | Barley | nucleus, plastid | 24.55 | 17.44 |
| TraesCS2B01G108800.1 | Wheat | nucleus | 28.64 | 15.27 |
| TraesCS2A01G094000.1 | Wheat | nucleus | 27.88 | 14.9 |
| Zm00001d047676_P002 | Maize | nucleus | 23.33 | 14.79 |
| CDX90783 | Canola | nucleus | 11.36 | 6.54 |
| CDY05126 | Canola | nucleus | 11.21 | 6.49 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.2 | GO:A0A078FQQ9 | UniProt:A0A078FQQ9 | EnsemblPlants:CDY14653 | ProteinID:CDY14653 |
| ProteinID:CDY14653.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0046872 | EnsemblPlantsGene:GSBRNA2T00084431001 |
| InterPro:IPR001841 | InterPro:IPR013083 | InterPro:IPR019787 | PFAM:PF00628 | PFAM:PF13639 | ScanProsite:PS00518 |
| PFscan:PS50016 | PFscan:PS50089 | PANTHER:PTHR10615 | PANTHER:PTHR10615:SF132 | SMART:SM00184 | SMART:SM00249 |
| SUPFAM:SSF57850 | SUPFAM:SSF57903 | UniParc:UPI0004EEE1BA | InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD | InterPro:Znf_PHD-finger |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_RING_CS | SEG:seg | : | : |
Description
BnaC05g19100DBnaC05g19100D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FQQ9]
Coordinates
chrLK032046:+:6054..8526
Molecular Weight (calculated)
74270.8 Da
IEP (calculated)
5.613
GRAVY (calculated)
-0.774
Length
660 amino acids
Sequence
(BLAST)
(BLAST)
001: MRLEEQENVS HETEKEDDGD YDEDEDGDEE FTADEEDVSL DEEEEEEEEE EKVCKRNMRK QRSRGGRKRR KKCSVTNGRK RRGKKTKEGV DEDEDDDDCL
101: PVRKKVKTRS SRPRRRCTVP SDSDIAFSGE SDFEYTISEE EREQVREASS LLRSSVTSIR KTTVHKDLPQ LRKSPVKKVE QVKRDVMKNV CGICLSEEDM
201: RRLKGTLDCC SHYFCFTCIM EWSKVESRCP LCKQRFRTIS KPARSTPGVD LREVVIPVPE RDQVYQPTEE ELRSYLDPYE NTICSECHQG EDDGLMLLCD
301: LCDSSAHTYC VGLGREVPEG NWYCEVCRPV ALGSASSQTH TTSEQQRVSG FFSRPSPLVV SGQYQDPSLL VSPRTPFSNG EYLFSSRLPN GDVQGSSPSG
401: LGATTLSRRR TLHRHIQNII NGDRLINMGS RGGGTSMIAN SSDGFVSTQI GHGREREVPQ HSLQTGMSLY TISEERLPNS SPLISAHNPE LLSSRLDHFG
501: SEQAVGRYSN NTFLGDQPID LGLHHGVGQG DPLFGNQQHL RSYMPNTMPS TGGEQLQHRV NDHLKNLSRQ INLGQATFDE ISTCSLHTIL AACGLEHKSS
601: EVHLVPPPVT CLHDDMSPCS SSSSSLMKGC CYSCFDSFVE DVVKMILDTR QPHWLRLGLH
101: PVRKKVKTRS SRPRRRCTVP SDSDIAFSGE SDFEYTISEE EREQVREASS LLRSSVTSIR KTTVHKDLPQ LRKSPVKKVE QVKRDVMKNV CGICLSEEDM
201: RRLKGTLDCC SHYFCFTCIM EWSKVESRCP LCKQRFRTIS KPARSTPGVD LREVVIPVPE RDQVYQPTEE ELRSYLDPYE NTICSECHQG EDDGLMLLCD
301: LCDSSAHTYC VGLGREVPEG NWYCEVCRPV ALGSASSQTH TTSEQQRVSG FFSRPSPLVV SGQYQDPSLL VSPRTPFSNG EYLFSSRLPN GDVQGSSPSG
401: LGATTLSRRR TLHRHIQNII NGDRLINMGS RGGGTSMIAN SSDGFVSTQI GHGREREVPQ HSLQTGMSLY TISEERLPNS SPLISAHNPE LLSSRLDHFG
501: SEQAVGRYSN NTFLGDQPID LGLHHGVGQG DPLFGNQQHL RSYMPNTMPS TGGEQLQHRV NDHLKNLSRQ INLGQATFDE ISTCSLHTIL AACGLEHKSS
601: EVHLVPPPVT CLHDDMSPCS SSSSSLMKGC CYSCFDSFVE DVVKMILDTR QPHWLRLGLH
001: MGKRNTSWAR NSNRKVRSKD KGSDESDEDY VISDEDEEES EADLKEEYAS SVDGEPSFDG FNGSDAVEDE ELDEVEEEDV MLRNVEWPKV KTGPRGNRKI
101: TGCKSRKTNQ VVVSDNEDVD LDDADDEDDE IRNSRNAVGK SGSLDGEKHQ RIGLGKRRRV FYEIEDEDGD YPEEDGDEEE ERDVENVDSN SLHDGEDGKM
201: ALEEQDNVSH ETEKEDDGDY EDEDEDDDGD EDFTADEDVS LDEEEEEEII ACNKNALKVC KGNKRKRRSG EGRKRRKKCS VAKTRLTRGR KRRVRNTKKG
301: VDEDDDDFVD DCLPARKKAK TKSSRPRPRR RCTVPSDSDV ASSGESDYEY TISEEEREQI REAGSLLKSS VNHASSIRQT TVNKDLPQLR KSPVKKGEKK
401: VELVKRDVIK NVCGICLSEE DMRRLKGTLD CCSHYFCFTC IMEWSKVESR CPLCKQRFRT ISKPARSTPG VDLREVVIPV PERDQVYQPT EEELRSYLDP
501: YENIICTECH QGDDDGLMLL CDLCDSSAHT YCVGLGREVP EGNWYCEGCR PVALGSASSQ THIISEQQRG SGFYSRPSPL VVSGQYQDVS LIVSPRTPFF
601: NGENLFSPRI PNGDAQGSSP SGLGATTLSR RRTLHRHIQN IINGDRLINM GARTGGTSSD GFVTTQIGHG RTIDPSQPVA SQETGISLYA ISEERLPNNN
701: SLISAHDPEL LSPKLDEFGS EEAFRRLSNN TFLGERPIDL GFHHGLAQGD PLVSNQQRLH SHMPNTMSSM AGERLQERVK AHLKNLSSQN DLGQTTFDEI
801: STCSIHTILA ACGLEHESSE VHLVPPPVTC THHHMTPGSS SSSSSGSSLM KGCCYSCFDS FVEDVVKMIL DTRQPHWLSL GLH
101: TGCKSRKTNQ VVVSDNEDVD LDDADDEDDE IRNSRNAVGK SGSLDGEKHQ RIGLGKRRRV FYEIEDEDGD YPEEDGDEEE ERDVENVDSN SLHDGEDGKM
201: ALEEQDNVSH ETEKEDDGDY EDEDEDDDGD EDFTADEDVS LDEEEEEEII ACNKNALKVC KGNKRKRRSG EGRKRRKKCS VAKTRLTRGR KRRVRNTKKG
301: VDEDDDDFVD DCLPARKKAK TKSSRPRPRR RCTVPSDSDV ASSGESDYEY TISEEEREQI REAGSLLKSS VNHASSIRQT TVNKDLPQLR KSPVKKGEKK
401: VELVKRDVIK NVCGICLSEE DMRRLKGTLD CCSHYFCFTC IMEWSKVESR CPLCKQRFRT ISKPARSTPG VDLREVVIPV PERDQVYQPT EEELRSYLDP
501: YENIICTECH QGDDDGLMLL CDLCDSSAHT YCVGLGREVP EGNWYCEGCR PVALGSASSQ THIISEQQRG SGFYSRPSPL VVSGQYQDVS LIVSPRTPFF
601: NGENLFSPRI PNGDAQGSSP SGLGATTLSR RRTLHRHIQN IINGDRLINM GARTGGTSSD GFVTTQIGHG RTIDPSQPVA SQETGISLYA ISEERLPNNN
701: SLISAHDPEL LSPKLDEFGS EEAFRRLSNN TFLGERPIDL GFHHGLAQGD PLVSNQQRLH SHMPNTMSSM AGERLQERVK AHLKNLSSQN DLGQTTFDEI
801: STCSIHTILA ACGLEHESSE VHLVPPPVTC THHHMTPGSS SSSSSGSSLM KGCCYSCFDS FVEDVVKMIL DTRQPHWLSL GLH
Arabidopsis Description
F18C1.6 protein [Source:UniProtKB/TrEMBL;Acc:Q9M9X2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.