Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g100130.2.1 | Tomato | nucleus | 66.81 | 68.54 |
| VIT_14s0060g01560.t01 | Wine grape | nucleus | 25.5 | 33.02 |
| KRH33855 | Soybean | nucleus | 27.19 | 32.66 |
| Bra001159.1-P | Field mustard | nucleus | 16.33 | 32.43 |
| CDY14653 | Canola | nucleus | 22.55 | 32.42 |
| KRG92939 | Soybean | nucleus | 26.77 | 29.6 |
| GSMUA_Achr10P... | Banana | nucleus | 17.39 | 29.1 |
| CDY05191 | Canola | nucleus | 24.45 | 28.54 |
| CDX74135 | Canola | nucleus | 25.29 | 27.91 |
| AT3G05670.2 | Thale cress | nucleus | 25.5 | 27.41 |
| Os07t0690300-01 | Rice | nucleus | 13.91 | 25.14 |
| Os03t0302200-01 | Rice | nucleus | 20.76 | 24.66 |
| OQU92733 | Sorghum | nucleus | 20.44 | 24.04 |
| GSMUA_Achr11P... | Banana | nucleus | 19.6 | 23.91 |
| TraesCS4B01G186500.1 | Wheat | nucleus | 20.02 | 21.89 |
| TraesCS4A01G117900.1 | Wheat | nucleus | 19.92 | 21.7 |
| TraesCS4D01G187800.1 | Wheat | nucleus | 19.7 | 21.37 |
| Bra039418.1-P | Field mustard | nucleus | 7.9 | 21.07 |
| CDY27748 | Canola | cytosol | 7.9 | 21.01 |
| HORVU4Hr1G054580.2 | Barley | nucleus, plastid | 19.7 | 20.13 |
| TraesCS2D01G092600.1 | Wheat | nucleus | 17.91 | 19.61 |
| Zm00001d047676_P002 | Maize | nucleus | 21.18 | 19.31 |
| HORVU2Hr1G015670.1 | Barley | cytosol | 12.54 | 17.87 |
| TraesCS2A01G094000.1 | Wheat | nucleus | 22.66 | 17.41 |
| TraesCS2B01G108800.1 | Wheat | nucleus | 22.23 | 17.04 |
| PGSC0003DMT400010393 | Potato | nucleus | 11.06 | 16.15 |
Protein Annotations
| EntrezGene:102592881 | Gene3D:3.30.40.10 | MapMan:35.2 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0046872 |
| InterPro:IPR001841 | InterPro:IPR013083 | InterPro:IPR019787 | UniProt:M1CAW0 | PFAM:PF00628 | PFAM:PF13639 |
| EnsemblPlantsGene:PGSC0003DMG400024731 | PGSC:PGSC0003DMG400024731 | EnsemblPlants:PGSC0003DMT400063611 | ScanProsite:PS00518 | PFscan:PS50016 | PFscan:PS50089 |
| PANTHER:PTHR22937 | PANTHER:PTHR22937:SF77 | SMART:SM00184 | SMART:SM00249 | SUPFAM:SSF57850 | SUPFAM:SSF57903 |
| UniParc:UPI000295A37F | RefSeq:XP_006344715.1 | InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD | InterPro:Znf_PHD-finger | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_RING_CS | SEG:seg | : | : | : |
Description
Splicing factor, arginine/serine-rich 2,rnap interacting protein [Source:PGSC_GENE;Acc:PGSC0003DMG400024731]
Coordinates
chr1:+:77858769..77863677
Molecular Weight (calculated)
108244.0 Da
IEP (calculated)
4.640
GRAVY (calculated)
-1.180
Length
949 amino acids
Sequence
(BLAST)
(BLAST)
001: MAREGKAGRK TSDRRKAGST YRASDQSDED YTVDDDEEFD ESEDGYSSFV GDDSEESLGE YEDEEEEFKT RKVKRVARSR APSRKEKGTV KSRKRKRVSY
101: REDDDDDDED DEEFTPDCLD EEEEFPVTKG TNNSSKRRLR KGTVKDEDDE EFTPDCLDEE EEFPVTKGTN NSSKRRLRKG TVKDEDDEEF TPDCLDEEEE
201: FPVMKGTNNS SKRRLCEGTV KDEDDEEFTP DCLDEEEEEF PVTEGMDNSS KRQLRKATFK DEDEEFTPDC LDNEDDEEEE SPVMEGTDNS NKRRLRRGTV
301: KDEEDEELNP DGLHEEEDFP VMKGMKNSSR LRRRKATAKD DDEDDEEFTP ISLDEEEDIP ITKRMKNSSK PRLCKGYTKD DDDDEEFTPD GLDEEEEEEF
401: PEMEGIKYSA KPRSRKGTAR VQKRNRNHKK LKKITRKKSL KRRRLRRKAR SENDEEFIDV DPTMKEKNKK NAGQKRKRKR LTVDSDSDFV ASSGSSEREF
501: TISEEEREQV REANNFCRSL VTTWRGSASL KKSPIEEAPR LQRKHPARKA KEKMEELKIE AGKQICGICL SEEGKRTVRG TLNCCSHYFC FACIMEWSKV
601: ESRCPLCKQR FVTISKPARS DTGFDLRTVV IHVPERDQVY QPSEEELRGY LDPYENVLCT ECQQGGDDAL MLLCDLCDSP AHTYCVGLGH EVPEGNWYCE
701: SCRPTALASL NPQNLNPMPD NRTSGSFSVG SPPVANVRET FDLNEMYVPD TPLTEESGDF QSPRDGQVSS LASGIGAFTV SDRRRIQRQI HQLLNNRRRQ
801: LGNITGTLGA VSGNSLFGSQ IARSRELATQ PAIAQRAVPH NSFFRGRQLE SDAHLSQNPN LVPERSSNLS GQLNLNGAST SSQSFFGEFL ESELQGTDAS
901: FNFNLAHQQL HPCSSRSNVG PDASTSPCQF REPAVPSRTT LPSTLRRPF
101: REDDDDDDED DEEFTPDCLD EEEEFPVTKG TNNSSKRRLR KGTVKDEDDE EFTPDCLDEE EEFPVTKGTN NSSKRRLRKG TVKDEDDEEF TPDCLDEEEE
201: FPVMKGTNNS SKRRLCEGTV KDEDDEEFTP DCLDEEEEEF PVTEGMDNSS KRQLRKATFK DEDEEFTPDC LDNEDDEEEE SPVMEGTDNS NKRRLRRGTV
301: KDEEDEELNP DGLHEEEDFP VMKGMKNSSR LRRRKATAKD DDEDDEEFTP ISLDEEEDIP ITKRMKNSSK PRLCKGYTKD DDDDEEFTPD GLDEEEEEEF
401: PEMEGIKYSA KPRSRKGTAR VQKRNRNHKK LKKITRKKSL KRRRLRRKAR SENDEEFIDV DPTMKEKNKK NAGQKRKRKR LTVDSDSDFV ASSGSSEREF
501: TISEEEREQV REANNFCRSL VTTWRGSASL KKSPIEEAPR LQRKHPARKA KEKMEELKIE AGKQICGICL SEEGKRTVRG TLNCCSHYFC FACIMEWSKV
601: ESRCPLCKQR FVTISKPARS DTGFDLRTVV IHVPERDQVY QPSEEELRGY LDPYENVLCT ECQQGGDDAL MLLCDLCDSP AHTYCVGLGH EVPEGNWYCE
701: SCRPTALASL NPQNLNPMPD NRTSGSFSVG SPPVANVRET FDLNEMYVPD TPLTEESGDF QSPRDGQVSS LASGIGAFTV SDRRRIQRQI HQLLNNRRRQ
801: LGNITGTLGA VSGNSLFGSQ IARSRELATQ PAIAQRAVPH NSFFRGRQLE SDAHLSQNPN LVPERSSNLS GQLNLNGAST SSQSFFGEFL ESELQGTDAS
901: FNFNLAHQQL HPCSSRSNVG PDASTSPCQF REPAVPSRTT LPSTLRRPF
001: MGKRNTSWAR NSNRKVRSKD KGSDESDEDY VISDEDEEES EADLKEEYAS SVDGEPSFDG FNGSDAVEDE ELDEVEEEDV MLRNVEWPKV KTGPRGNRKI
101: TGCKSRKTNQ VVVSDNEDVD LDDADDEDDE IRNSRNAVGK SGSLDGEKHQ RIGLGKRRRV FYEIEDEDGD YPEEDGDEEE ERDVENVDSN SLHDGEDGKM
201: ALEEQDNVSH ETEKEDDGDY EDEDEDDDGD EDFTADEDVS LDEEEEEEII ACNKNALKVC KGNKRKRRSG EGRKRRKKCS VAKTRLTRGR KRRVRNTKKG
301: VDEDDDDFVD DCLPARKKAK TKSSRPRPRR RCTVPSDSDV ASSGESDYEY TISEEEREQI REAGSLLKSS VNHASSIRQT TVNKDLPQLR KSPVKKGEKK
401: VELVKRDVIK NVCGICLSEE DMRRLKGTLD CCSHYFCFTC IMEWSKVESR CPLCKQRFRT ISKPARSTPG VDLREVVIPV PERDQVYQPT EEELRSYLDP
501: YENIICTECH QGDDDGLMLL CDLCDSSAHT YCVGLGREVP EGNWYCEGCR PVALGSASSQ THIISEQQRG SGFYSRPSPL VVSGQYQDVS LIVSPRTPFF
601: NGENLFSPRI PNGDAQGSSP SGLGATTLSR RRTLHRHIQN IINGDRLINM GARTGGTSSD GFVTTQIGHG RTIDPSQPVA SQETGISLYA ISEERLPNNN
701: SLISAHDPEL LSPKLDEFGS EEAFRRLSNN TFLGERPIDL GFHHGLAQGD PLVSNQQRLH SHMPNTMSSM AGERLQERVK AHLKNLSSQN DLGQTTFDEI
801: STCSIHTILA ACGLEHESSE VHLVPPPVTC THHHMTPGSS SSSSSGSSLM KGCCYSCFDS FVEDVVKMIL DTRQPHWLSL GLH
101: TGCKSRKTNQ VVVSDNEDVD LDDADDEDDE IRNSRNAVGK SGSLDGEKHQ RIGLGKRRRV FYEIEDEDGD YPEEDGDEEE ERDVENVDSN SLHDGEDGKM
201: ALEEQDNVSH ETEKEDDGDY EDEDEDDDGD EDFTADEDVS LDEEEEEEII ACNKNALKVC KGNKRKRRSG EGRKRRKKCS VAKTRLTRGR KRRVRNTKKG
301: VDEDDDDFVD DCLPARKKAK TKSSRPRPRR RCTVPSDSDV ASSGESDYEY TISEEEREQI REAGSLLKSS VNHASSIRQT TVNKDLPQLR KSPVKKGEKK
401: VELVKRDVIK NVCGICLSEE DMRRLKGTLD CCSHYFCFTC IMEWSKVESR CPLCKQRFRT ISKPARSTPG VDLREVVIPV PERDQVYQPT EEELRSYLDP
501: YENIICTECH QGDDDGLMLL CDLCDSSAHT YCVGLGREVP EGNWYCEGCR PVALGSASSQ THIISEQQRG SGFYSRPSPL VVSGQYQDVS LIVSPRTPFF
601: NGENLFSPRI PNGDAQGSSP SGLGATTLSR RRTLHRHIQN IINGDRLINM GARTGGTSSD GFVTTQIGHG RTIDPSQPVA SQETGISLYA ISEERLPNNN
701: SLISAHDPEL LSPKLDEFGS EEAFRRLSNN TFLGERPIDL GFHHGLAQGD PLVSNQQRLH SHMPNTMSSM AGERLQERVK AHLKNLSSQN DLGQTTFDEI
801: STCSIHTILA ACGLEHESSE VHLVPPPVTC THHHMTPGSS SSSSSGSSLM KGCCYSCFDS FVEDVVKMIL DTRQPHWLSL GLH
Arabidopsis Description
F18C1.6 protein [Source:UniProtKB/TrEMBL;Acc:Q9M9X2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.