CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG92939	Soybean	nucleus	77.34	71.21
Bra001159.1-P	Field mustard	nucleus	21.9	36.19
VIT_14s0060g01560.t01	Wine grape	nucleus	31.14	33.56
CDY14653	Canola	nucleus	27.85	33.33
CDY05191	Canola	nucleus	32.28	31.37
CDX74135	Canola	nucleus	33.29	30.58
GSMUA_Achr10P...	Banana	nucleus	21.39	29.81
AT3G05670.2	Thale cress	nucleus	32.78	29.33
Solyc01g100130.2.1	Tomato	nucleus	33.67	28.76
PGSC0003DMT400063611	Potato	nucleus	32.66	27.19
GSMUA_Achr11P...	Banana	nucleus	26.2	26.61
Os03t0302200-01	Rice	nucleus	26.46	26.16
OQU92733	Sorghum	nucleus	25.57	25.03
Os07t0690300-01	Rice	nucleus	16.58	24.95
CDY27748	Canola	cytosol	10.76	23.81
KRH38611	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	3.67	23.77
Bra039418.1-P	Field mustard	nucleus	10.51	23.31
TraesCS4B01G186500.1	Wheat	nucleus	25.19	22.93
TraesCS4D01G187800.1	Wheat	nucleus	25.06	22.63
TraesCS4A01G117900.1	Wheat	nucleus	24.43	22.16
HORVU4Hr1G054580.2	Barley	nucleus, plastid	24.56	20.88
TraesCS2D01G092600.1	Wheat	nucleus	22.28	20.3
Zm00001d047676_P002	Maize	nucleus	25.44	19.31
HORVU2Hr1G015670.1	Barley	cytosol	15.06	17.87
TraesCS2A01G094000.1	Wheat	nucleus	25.44	16.28
TraesCS2B01G108800.1	Wheat	nucleus	24.94	15.91
KRH56752	Soybean	nucleus	7.59	15.31
KRH03187	Soybean	nucleus	10.89	14.08
KRH38612	Soybean	cytosol, nucleus, plastid	4.43	13.89
KRG98787	Soybean	cytosol	4.3	9.77
KRH41328	Soybean	nucleus	9.37	5.72
KRH60053	Soybean	nucleus	9.37	5.66

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	EMBL:ACUP02006559	ncoils:Coil	EnsemblPlantsGene:GLYMA_10G149400	GO:GO:0003674
GO:GO:0005488	GO:GO:0046872	UniProt:I1LB70	InterPro:IPR001841	InterPro:IPR013083	InterPro:IPR019787
EnsemblPlants:KRH33855	ProteinID:KRH33855	ProteinID:KRH33855.1	PFAM:PF00628	PFAM:PF13639	ScanProsite:PS00518
PFscan:PS50016	PFscan:PS50089	PANTHER:PTHR22937	PANTHER:PTHR22937:SF65	SMART:SM00184	SMART:SM00249
SUPFAM:SSF57850	SUPFAM:SSF57903	UniParc:UPI000295DBF3	InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD	InterPro:Znf_PHD-finger
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr10:-:38469764..38473037

Molecular Weight (calculated)

89820.7 Da

IEP (calculated)

5.124

GRAVY (calculated)

-1.156

Length

790 amino acids

Sequence
(BLAST)

001: MVRGGRFSGK RNFRKRVRSK EGGSDDSDED YVVSDEGREA SDYYCSSLDG CASEEGFDSF MEEEEEQFRR VRSINRSKSK KGIAGRRKNG SKSSHRRGRI
101: TYAEEEDVEE EEEEEEEFED EEEEDEDEEE YKEEEEEEES QEARNFKRSK AKNGVCGKKK RAGKISPKRG RKIRAEQLEE EEEEEEEEKQ VEEEEEEKVE
201: RSGAEEEEPE GDRDGEDEDF EYDDEDDEFL PEEEEYSDEE EMGGRNKKNE GVKMEKKVLQ KKRASVVSTR GRKRRSSRAS KKPLGNKRRK NGRLRKKEKC
301: EDEDNFMDNG TTIGTTTGRK RGQKRRRVLL SDSDYASSGS SDFEFTISEE EREQVREAKR LCGNLRNNLR SSSHPINKEA GVHEDQHRQR KPPARKGKEK
401: IEEPQGRKGK EKVEDLKSEK GKQTCGICLS EEDKRRVRGV LNCCTHFFCF ACIMEWAKVE SRCPLCKQRF KTISKPARST TGIDLREVVI QVPERDQVYQ
501: PSEEELRSYI DPYEYVMCSE CHQGGDDGLM LLCDICDSPA HTYCVGLGRE VPEGNWYCDG CRPVALGSSS SQVQEGVADP RVSVQSHPIR PPPALHVRES
601: IDLNLISSPR AAFNQGFGHL PSSRFSGRSV EGASPVSGGA PTLSERRWIH RQIQQLLSID RMASSPGRTN GVSATSSTSN LYSSQIDQSR GTATLHARTQ
701: DVGTSYHTFF DERLCNNSSP LMQNGALWPG LMGTTPVPDC ELAHQFSRSN IVPDSGLSPA IREESNFHIA KEQLQSMVKS HLKNCLKILI

Best Arabidopsis Sequence Match ( AT1G67180.5 )
(BLAST)

001: MFDSGEEVGP LMIELPAVSE EAKVTKKVNK ASETFDKYFS NGGENRSGST SELATWMEKN VEANRHSVRL RTKRPSSILE NKENSGVAES SRKGKKRVVK
101: QRSYRNLIDL ESDEESDNNH HDNSDENQNE TQDHREPADE NVRGFVFEQG ETSALRHPGD LATPNWDVDE IEESENWSHS AVFKRPRSFS PEIKPQDDDE
201: STREETEATE KAPAQVSCII CWTEFSSSRG ILPCGHRFCY SCIQKWADRL VSERKKTTCP LCKSNFITIT KIEDADSSDQ KIYSQTVPDL SSTNNILVVL
301: PEEEEQRQTL NPLTRASGCS RCYLTEPEEL LIRCHLCNFR RIHSYCLDPY LLPWTCNHCN DLQMMYHRRN Y

Arabidopsis Description

F5A8.9 protein [Source:UniProtKB/TrEMBL;Acc:Q9ZW89]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.