CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d047676_P002	Maize	nucleus	56.01	43.42
Os03t0302200-01	Rice	nucleus	39.03	39.42
TraesCS4B01G186500.1	Wheat	nucleus	38.29	35.6
TraesCS4D01G187800.1	Wheat	nucleus	37.67	34.74
TraesCS4A01G117900.1	Wheat	nucleus	37.42	34.67
HORVU4Hr1G054580.2	Barley	nucleus, plastid	36.93	32.08
GSMUA_Achr10P...	Banana	nucleus	20.82	29.63
GSMUA_Achr11P...	Banana	nucleus	27.76	28.79
Bra001159.1-P	Field mustard	nucleus	15.24	25.73
KRH33855	Soybean	nucleus	25.03	25.57
CDY14653	Canola	nucleus	20.57	25.15
VIT_14s0060g01560.t01	Wine grape	nucleus	21.69	23.87
AT3G05670.2	Thale cress	nucleus	25.53	23.33
CDY05191	Canola	nucleus	22.8	22.63
KRG92939	Soybean	nucleus	23.92	22.49
CDX74135	Canola	nucleus	22.92	21.51
Solyc01g100130.2.1	Tomato	nucleus	23.92	20.86
PGSC0003DMT400063611	Potato	nucleus	24.04	20.44
CDY27748	Canola	cytosol	6.32	14.29
Bra039418.1-P	Field mustard	nucleus	6.07	13.76
EER88243	Sorghum	nucleus	11.65	12.11
OQU84317	Sorghum	nucleus	7.93	5.11

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	UniProt:A0A1Z5S9X8	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0046872	InterPro:IPR001841	InterPro:IPR013083	InterPro:IPR019787	EnsemblPlants:OQU92733	ProteinID:OQU92733
ProteinID:OQU92733.1	PFAM:PF00628	PFAM:PF13639	ScanProsite:PS00518	PFscan:PS50016	PFscan:PS50089
PANTHER:PTHR22937	PANTHER:PTHR22937:SF77	SMART:SM00184	SMART:SM00249	EnsemblPlantsGene:SORBI_3001G398950	SUPFAM:SSF57850
SUPFAM:SSF57903	UniParc:UPI000B426CEA	InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD	InterPro:Znf_PHD-finger	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:68478002..68482606

Molecular Weight (calculated)

91648.6 Da

IEP (calculated)

4.431

GRAVY (calculated)

-1.147

Length

807 amino acids

Sequence
(BLAST)

001: MGTGEGSPPA RRAITGRRRR RWLDGEEEED DDEYVLEEEE EEEDCAEELR ASSASEEGED SDAEYQEEAE EEEEVETPRP KRLAKGSDRG RKGKVDPATA
101: RSRRRKYEDD EDYEEEVDEG DEVEYHDELE EVEEEEEVVP PRPKSVAKCG ARGRNVKLSP GAKRSHKRKQ EEGDEDRDFD PELDDAEDED IDFDPDVNVK
201: LSPAVKRSHK RKQEEEDEDI DFDPELDDED DELDEDIDFD PDVDGDEEDE YQDEEEEELV STRGRKVTVK NPVKRKSISK RQALKKKKKN RGSKVSRRKG
301: ASAKVKKSAP VRRRRKRSII DDYEDEDVDE DDDDDFIVDD EVIVNRQPRK KARTGSGREA EVDPQVSIEE ETWPDLESDT SDFEFATSDE EPNNVETPVV
401: EPATVRKGRK KRISGSESSS DSEFVVSDKE LEELREPEPP KAAPILPAPL RRICITRHGE GKGKEKQEPE EAGKPICGIC LSEEQRATVQ GVLNCCSHYF
501: CFACIMEWSR VESRCPLCKQ RFTTITKSSK VDLGLGVRKA VIKVEERDQV YQPTEEEIRR WLDPYENVVC IECNQGGDDS LMLLCDICDS SAHTYCVGLG
601: REVPEGNWYC GGCRLGDEGP SYTGIQRTVA YERQTYRNHV DSSSVSFGML ASSGTFERPP SINPRHSFQG IDLNLSPREF PGESHPAESQ VSTDSVSTPT
701: GRRTVSARRQ IHRYIRILLA RPRQPSRPDV FHNIAQHSGG VPRTEPNRQN FPSSSEANTS HNLPDGIQNH HGSLPFVQAQ NNFAPFMSLD GDDFQQIEGV
801: KSNLRNM

Best Arabidopsis Sequence Match ( AT4G10930.1 )
(BLAST)

0001: MELDFDASNL VEDEAVEVEH NGMTEIEGER CGICMDIIID RGVLDCCQHW FCFECIDNWS TIMNLCPLCQ REFQLITCVP VFDSGESSKV DEDLVSGDED
0101: CCIEEETDVV SSPSHYIDDT HYIDENAVVC LDGDLCKIRN TFSYIEGDSN LDTSIACDSC DMWYHAICVG FDVENASEDT WVCPRCLSNE KPHEPDTSPM
0201: ETQPDTSLME TRKSLDISEK TNSGCSVEAV YSGNFSVTVA DDGETALVVS IVKGDESHMG PSDTNPLPVQ AKMDGDPDSS HLKILCREEN TEQVAVKSEL
0301: NQSLPHDISS RLSSDSDQPF FAADIENRAD PVVEKDCLSI DDKKNLSTAA ISNSDVASVI SLKRKHSDCS GDDGNSETKP EIYESLNELK LEEEEELTTV
0401: HHESRSPSNN TTVDIFSIVK GTGRRKNLMR SNPTDKSSEA ENAAGLRVKK IKRTPEDEKE SMVLVEKLRK EIREAVRNKS MEDIRENQFD PKLLAAFRAA
0501: VAGPKTGEAP RRSSALAVKA KKLMLQKGKV RENLTKKIYA DLNGKRKSAW HRDCEVEFWK HRCIQGRKPE KIETLKSVLS LLKNKPADTK TNFSSETPQA
0601: SNPILSRLYL ADTSVFPRND NLKPLLAPKE MGNSQNNGKP TEASKTLPKI SAAKGSSVKA AGSKLNSGNK QSDGQPNLTS SNSKEMVENP DDLKKDKRKW
0701: ALQVLARKKA LAGNNSTQDK EGSPELKGNY PLLAQLPADM RPSLATSRHN KVPVAVRQTQ LYRLTEHLLK KENLLTIRRS AATELAVADA INIEKAIADK
0801: SSSKVVYLNL CSQEILHHSE SKTMDNAVEP NSSSPMADSE SERISSKDSD NPAVLEALRA AGLADSPPNS PTRSVEVLPE KGDSSLDKTR ETGPYNVFDM
0901: DSVPDTDIFG DFEYELDEED YFGATMAKKA SVMQPDESLT KVKVVLSTVQ PGKSLNPSEV VEDEETTTEN LNETTNGKED GKSFVPMELV PEAEGEGEGE
1001: GEGEGEGEGG GEILSVAECE ELYGPGTEKL VERPLIEGFA ENGVKAKAPD SECESNTQRE FIASNFEITC IQEKKLPRSI QKCKPSEKPS KEEKGKADGF
1101: GNSITKKVEA YIKEHIRPLC KSGVINVEQY RWAVTKTTEK VMKYHSKAKS ANFLIKEGDK IKKLAEQYVE TASSGAHHKD KCK

Arabidopsis Description

unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plant /.../37; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). [Source:TAIR;Acc:AT4G10930]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.