Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra001159.1-P | Field mustard | nucleus | 54.88 | 98.74 |
| CDY14653 | Canola | nucleus | 64.77 | 84.39 |
| CDY27748 | Canola | cytosol | 30.0 | 72.27 |
| CDY05191 | Canola | nucleus | 62.09 | 65.68 |
| AT3G05670.2 | Thale cress | nucleus | 58.72 | 57.19 |
| VIT_14s0060g01560.t01 | Wine grape | nucleus | 32.79 | 38.47 |
| KRG92939 | Soybean | nucleus | 36.86 | 36.95 |
| KRH33855 | Soybean | nucleus | 30.58 | 33.29 |
| GSMUA_Achr10P... | Banana | nucleus | 19.07 | 28.92 |
| GSMUA_Achr11P... | Banana | nucleus | 25.81 | 28.53 |
| Solyc01g100130.2.1 | Tomato | nucleus | 28.02 | 26.05 |
| PGSC0003DMT400063611 | Potato | nucleus | 27.91 | 25.29 |
| Os03t0302200-01 | Rice | nucleus | 22.33 | 24.03 |
| Os07t0690300-01 | Rice | nucleus | 14.3 | 23.43 |
| OQU92733 | Sorghum | nucleus | 21.51 | 22.92 |
| TraesCS2D01G092600.1 | Wheat | nucleus | 22.44 | 22.26 |
| HORVU2Hr1G015670.1 | Barley | cytosol | 16.74 | 21.62 |
| TraesCS4A01G117900.1 | Wheat | nucleus | 21.63 | 21.35 |
| TraesCS4B01G186500.1 | Wheat | nucleus | 21.4 | 21.2 |
| TraesCS4D01G187800.1 | Wheat | nucleus | 21.28 | 20.91 |
| HORVU4Hr1G054580.2 | Barley | nucleus, plastid | 21.16 | 19.59 |
| TraesCS2B01G108800.1 | Wheat | nucleus | 25.12 | 17.45 |
| TraesCS2A01G094000.1 | Wheat | nucleus | 24.88 | 17.33 |
| Zm00001d047676_P002 | Maize | nucleus | 20.7 | 17.1 |
| CDY05126 | Canola | nucleus | 8.72 | 6.58 |
| CDX90783 | Canola | nucleus | 8.72 | 6.54 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.2 | GO:A0A078CBH1 | EnsemblPlants:CDX74135 | ProteinID:CDX74135 | ProteinID:CDX74135.1 |
| ncoils:Coil | EnsemblPlantsGene:GSBRNA2T00111894001 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:IPR019787 | PFAM:PF00628 |
| PFAM:PF13639 | ScanProsite:PS00518 | PFscan:PS50016 | PFscan:PS50089 | PANTHER:PTHR10615 | PANTHER:PTHR10615:SF132 |
| SMART:SM00184 | SMART:SM00249 | SUPFAM:SSF57850 | SUPFAM:SSF57903 | UniParc:UPI0004EE5C83 | InterPro:Znf_FYVE_PHD |
| InterPro:Znf_PHD | InterPro:Znf_PHD-finger | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_RING_CS | SEG:seg |
Description
BnaA03g29120D
Coordinates
chrLK031800:-:1503108..1506893
Molecular Weight (calculated)
96576.1 Da
IEP (calculated)
4.453
GRAVY (calculated)
-0.915
Length
860 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKRGRNSDV KVRSKDSDDS DEDYEISDED EEEEEEEYEE AVDLSEFDDC DLKEYDEGSF DGCDVSDAVE DEGFNEVEEE EDVMLRNVEW PKVKTGPRGN
101: RKITGCKSRK VDEVVASDNE DVDLDDEDDE EIGESRKGVK AGCLGGIGLG KRRRVFYEVE DEDGEEEEEE RDVESASCEK VDLDSGRNGE DGEMRLEEQE
201: NVSHESEKED DGDYDEDEDE DGDEEFTADE EDVSLDEEEE EEEEEEKVCK RNKRKQRSRG GRKRRNGRKR RGKKTKEGVD EDEDDDDCLP VRKKVKTRSS
301: RPRRRCTVPS DSDIASSGES DFEYTISEEE REQVREASSL LRSSVTSIRK TTVHKALPQL RKSPVKKVEK KIEQVKRDVM KNVCGICLSE EDMRRLKGTL
401: DCCSHYFCFT CIMEWSKVES RCPLCKQRFR TISKPARSTP GVDLREVLIP VPERDQVYQP TEEELRSYLD PYENTICSEC HQGEDDGLML LCDLCDSSAH
501: TYCVGLGREV PEGNWYCEVC RPVAVGSASS QTHTTSEQQG VSGFYTRPSP LVVSGQYQDP SLLVSPRTPF SNGEYLFSSR LPNSDVQGSS PSGLGATTLS
601: RRRTLHRHIQ NIINGDRLVN MGSGGGGTSM IANSSDGFVS TQIGHGRERE APQPSLQTGM SLYTISEERL PNNNPLISAH EPELLSSRLD HFGSVEAVGR
701: FPSDIFHGNR PSDLGLHHGL AQGEPLFGNQ QHLRGYMPNT MPFTGGEQLQ QRVSAHLKNL SRQINLGQAT FDEISTCSLH TILAACGLEH KSSEVHFVPP
801: PVTCLHNDMR PCSSSGNNSS SSSSSLMKGC CYSCFDSFVE DVVKMILDTR QPHWLRLGLH
101: RKITGCKSRK VDEVVASDNE DVDLDDEDDE EIGESRKGVK AGCLGGIGLG KRRRVFYEVE DEDGEEEEEE RDVESASCEK VDLDSGRNGE DGEMRLEEQE
201: NVSHESEKED DGDYDEDEDE DGDEEFTADE EDVSLDEEEE EEEEEEKVCK RNKRKQRSRG GRKRRNGRKR RGKKTKEGVD EDEDDDDCLP VRKKVKTRSS
301: RPRRRCTVPS DSDIASSGES DFEYTISEEE REQVREASSL LRSSVTSIRK TTVHKALPQL RKSPVKKVEK KIEQVKRDVM KNVCGICLSE EDMRRLKGTL
401: DCCSHYFCFT CIMEWSKVES RCPLCKQRFR TISKPARSTP GVDLREVLIP VPERDQVYQP TEEELRSYLD PYENTICSEC HQGEDDGLML LCDLCDSSAH
501: TYCVGLGREV PEGNWYCEVC RPVAVGSASS QTHTTSEQQG VSGFYTRPSP LVVSGQYQDP SLLVSPRTPF SNGEYLFSSR LPNSDVQGSS PSGLGATTLS
601: RRRTLHRHIQ NIINGDRLVN MGSGGGGTSM IANSSDGFVS TQIGHGRERE APQPSLQTGM SLYTISEERL PNNNPLISAH EPELLSSRLD HFGSVEAVGR
701: FPSDIFHGNR PSDLGLHHGL AQGEPLFGNQ QHLRGYMPNT MPFTGGEQLQ QRVSAHLKNL SRQINLGQAT FDEISTCSLH TILAACGLEH KSSEVHFVPP
801: PVTCLHNDMR PCSSSGNNSS SSSSSLMKGC CYSCFDSFVE DVVKMILDTR QPHWLRLGLH
001: MGKRNTSWAR NSNRKVRSKD KGSDESDEDY VISDEDEEES EADLKEEYAS SVDGEPSFDG FNGSDAVEDE ELDEVEEEDV MLRNVEWPKV KTGPRGNRKI
101: TGCKSRKTNQ VVVSDNEDVD LDDADDEDDE IRNSRNAVGK SGSLDGEKHQ RIGLGKRRRV FYEIEDEDGD YPEEDGDEEE ERDVENVDSN SLHDGEDGKM
201: ALEEQDNVSH ETEKEDDGDY EDEDEDDDGD EDFTADEDVS LDEEEEEEII ACNKNALKVC KGNKRKRRSG EGRKRRKKCS VAKTRLTRGR KRRVRNTKKG
301: VDEDDDDFVD DCLPARKKAK TKSSRPRPRR RCTVPSDSDV ASSGESDYEY TISEEEREQI REAGSLLKSS VNHASSIRQT TVNKDLPQLR KSPVKKGEKK
401: VELVKRDVIK NVCGICLSEE DMRRLKGTLD CCSHYFCFTC IMEWSKVESR CPLCKQRFRT ISKPARSTPG VDLREVVIPV PERDQVYQPT EEELRSYLDP
501: YENIICTECH QGDDDGLMLL CDLCDSSAHT YCVGLGREVP EGNWYCEGCR PVALGSASSQ THIISEQQRG SGFYSRPSPL VVSGQYQDVS LIVSPRTPFF
601: NGENLFSPRI PNGDAQGSSP SGLGATTLSR RRTLHRHIQN IINGDRLINM GARTGGTSSD GFVTTQIGHG RTIDPSQPVA SQETGISLYA ISEERLPNNN
701: SLISAHDPEL LSPKLDEFGS EEAFRRLSNN TFLGERPIDL GFHHGLAQGD PLVSNQQRLH SHMPNTMSSM AGERLQERVK AHLKNLSSQN DLGQTTFDEI
801: STCSIHTILA ACGLEHESSE VHLVPPPVTC THHHMTPGSS SSSSSGSSLM KGCCYSCFDS FVEDVVKMIL DTRQPHWLSL GLH
101: TGCKSRKTNQ VVVSDNEDVD LDDADDEDDE IRNSRNAVGK SGSLDGEKHQ RIGLGKRRRV FYEIEDEDGD YPEEDGDEEE ERDVENVDSN SLHDGEDGKM
201: ALEEQDNVSH ETEKEDDGDY EDEDEDDDGD EDFTADEDVS LDEEEEEEII ACNKNALKVC KGNKRKRRSG EGRKRRKKCS VAKTRLTRGR KRRVRNTKKG
301: VDEDDDDFVD DCLPARKKAK TKSSRPRPRR RCTVPSDSDV ASSGESDYEY TISEEEREQI REAGSLLKSS VNHASSIRQT TVNKDLPQLR KSPVKKGEKK
401: VELVKRDVIK NVCGICLSEE DMRRLKGTLD CCSHYFCFTC IMEWSKVESR CPLCKQRFRT ISKPARSTPG VDLREVVIPV PERDQVYQPT EEELRSYLDP
501: YENIICTECH QGDDDGLMLL CDLCDSSAHT YCVGLGREVP EGNWYCEGCR PVALGSASSQ THIISEQQRG SGFYSRPSPL VVSGQYQDVS LIVSPRTPFF
601: NGENLFSPRI PNGDAQGSSP SGLGATTLSR RRTLHRHIQN IINGDRLINM GARTGGTSSD GFVTTQIGHG RTIDPSQPVA SQETGISLYA ISEERLPNNN
701: SLISAHDPEL LSPKLDEFGS EEAFRRLSNN TFLGERPIDL GFHHGLAQGD PLVSNQQRLH SHMPNTMSSM AGERLQERVK AHLKNLSSQN DLGQTTFDEI
801: STCSIHTILA ACGLEHESSE VHLVPPPVTC THHHMTPGSS SSSSSGSSLM KGCCYSCFDS FVEDVVKMIL DTRQPHWLSL GLH
Arabidopsis Description
F18C1.6 protein [Source:UniProtKB/TrEMBL;Acc:Q9M9X2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.