Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX90783 | Canola | nucleus | 90.96 | 90.41 |
| Bra000729.1-P | Field mustard | nucleus | 90.88 | 87.5 |
| AT4G10930.1 | Thale cress | nucleus | 67.11 | 64.67 |
| KRH38611 | Soybean | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 5.96 | 55.74 |
| Solyc12g055910.1.1 | Tomato | nucleus | 39.21 | 36.52 |
| VIT_02s0025g01650.t01 | Wine grape | nucleus | 40.61 | 36.12 |
| KRH41328 | Soybean | nucleus | 40.7 | 35.86 |
| KRH60053 | Soybean | nucleus | 40.18 | 35.04 |
| Os12t0209700-01 | Rice | nucleus | 15.09 | 30.61 |
| GSMUA_Achr3P31620_001 | Banana | nucleus | 34.21 | 29.28 |
| TraesCS3D01G287700.1 | Wheat | nucleus | 31.75 | 28.26 |
| OQU84317 | Sorghum | nucleus | 30.7 | 27.96 |
| TraesCS3A01G287900.3 | Wheat | nucleus | 31.93 | 27.81 |
| TraesCS3B01G322600.5 | Wheat | mitochondrion | 31.58 | 27.25 |
| Zm00001d053989_P003 | Maize | plastid | 30.26 | 26.3 |
| CDY14653 | Canola | nucleus | 6.49 | 11.21 |
| CDY27748 | Canola | cytosol | 3.42 | 10.92 |
| CDY05191 | Canola | nucleus | 6.32 | 8.86 |
| CDX74135 | Canola | nucleus | 6.58 | 8.72 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | GO:A0A078EV65 | EnsemblPlants:CDY05126 | ProteinID:CDY05126 | ProteinID:CDY05126.1 |
| EnsemblPlantsGene:GSBRNA2T00119910001 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:IPR019787 | PFAM:PF00628 | PFAM:PF13639 |
| ScanProsite:PS00518 | PFscan:PS50016 | PFscan:PS50089 | PANTHER:PTHR22937 | PANTHER:PTHR22937:SF76 | SMART:SM00184 |
| SMART:SM00249 | SUPFAM:SSF57850 | SUPFAM:SSF57903 | UniParc:UPI0004EE81B9 | InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD |
| InterPro:Znf_PHD-finger | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_RING_CS | SEG:seg | : |
Description
BnaC03g29240D
Coordinates
chrLK031959:-:870411..876352
Molecular Weight (calculated)
125326.0 Da
IEP (calculated)
4.797
GRAVY (calculated)
-0.632
Length
1140 amino acids
Sequence
(BLAST)
(BLAST)
0001: MELDFDAGNL LEDEAGEVGH NVSDMAGFEG ERCGICMDII VDRGLLDCCQ HWFCFECIDN WSSIMNLCPL CQREFQLITC VPVNDFGESS KVDEVSLSGD
0101: EDWCVEEDTD ALSSPSHYID ENAVICLDGD LCKIRNTFNY IGGDSNLDTS IACDSCDTWY HAVCVGFDLE ITSEDTWVCP RCLSSEKPLE SDASPMETTK
0201: PLEIPESTNN GCSVEAIYSG NFSVTVADDG ETALVVSTVK GDEWPMKPSD TTASLVQATV YGDPDNSGRK ENTEQVPGKS ELMQSLPHQL SSELPLESNQ
0301: PLFAAQMETR ADPVIGLEEK ECLPVNVEKS LSSTAFSNSD VASVVSLKRK HSDCSRDDDN SKIKAEIAER LVKPTLEEME EKATIQHESR SPSNNTTVDI
0401: FSIVKGFGSK KKPTLPNTTD KSSEGENAVG LRVKKIKKTP EDDKESLVLV EKLRKEIREA VRNKSMEDIR KDQFDPKLLA AFRAAVAGSK TDEAPRKIPA
0501: LALKAKKLML QKGKVRENLT KKVYADTNGK RKSAWHRDCE VEFWKHRCMK AGKPEKIETL KSVLSLLKKN PADTEKNVSA EAPQASNPIL SRLYLADTSV
0601: FPRNHDIKPL VGSKETGMDK TLPKSSDVKG NNSNAAGSKI NSGSKPPIFE NPDELKKDKR KWALQVLARK KALAGSNSSE DKEGSPELKG NYPLLAQLPA
0701: DMRPNLATSR HNKVPVAVRQ AQLYRLTEHL LKKENLLEVR RSAATELAVA DAINIEKVIA DKSSSKVVYL NLCSQEILQH SESKAMDNKA VEPITSPPLS
0801: NNGIEHVDDK DSDDLAVLQA LRAAGLVDSP PNSPNRSSEV PPDKEDSSLD KAREVVGPDN VLDTGSVPDT DIFGDFEYEL DDEDYIGATK ATKASEAHQD
0901: EGLTKVKVVL STVQPEKVLN QSKVLGNEET TINQEGTTNV EEDGKSFVPM EPVPEAEGEG EGEGGEILSL TECEELYGPG TEKLVEKPLT EGSADNGLQA
1001: KAPDSECESN THREFIASNF EKTSIQEKKL PTRIPNCNPS EKPSKEEKSK ADGFSDSIIK KVEAYIKEHI RPLCKSGVIN VDQYRWAVTK TREKVMKYHS
1101: KAKSANFLIK EGDKIKKLAE QYVETAASSS TGAHHKDKCK
0101: EDWCVEEDTD ALSSPSHYID ENAVICLDGD LCKIRNTFNY IGGDSNLDTS IACDSCDTWY HAVCVGFDLE ITSEDTWVCP RCLSSEKPLE SDASPMETTK
0201: PLEIPESTNN GCSVEAIYSG NFSVTVADDG ETALVVSTVK GDEWPMKPSD TTASLVQATV YGDPDNSGRK ENTEQVPGKS ELMQSLPHQL SSELPLESNQ
0301: PLFAAQMETR ADPVIGLEEK ECLPVNVEKS LSSTAFSNSD VASVVSLKRK HSDCSRDDDN SKIKAEIAER LVKPTLEEME EKATIQHESR SPSNNTTVDI
0401: FSIVKGFGSK KKPTLPNTTD KSSEGENAVG LRVKKIKKTP EDDKESLVLV EKLRKEIREA VRNKSMEDIR KDQFDPKLLA AFRAAVAGSK TDEAPRKIPA
0501: LALKAKKLML QKGKVRENLT KKVYADTNGK RKSAWHRDCE VEFWKHRCMK AGKPEKIETL KSVLSLLKKN PADTEKNVSA EAPQASNPIL SRLYLADTSV
0601: FPRNHDIKPL VGSKETGMDK TLPKSSDVKG NNSNAAGSKI NSGSKPPIFE NPDELKKDKR KWALQVLARK KALAGSNSSE DKEGSPELKG NYPLLAQLPA
0701: DMRPNLATSR HNKVPVAVRQ AQLYRLTEHL LKKENLLEVR RSAATELAVA DAINIEKVIA DKSSSKVVYL NLCSQEILQH SESKAMDNKA VEPITSPPLS
0801: NNGIEHVDDK DSDDLAVLQA LRAAGLVDSP PNSPNRSSEV PPDKEDSSLD KAREVVGPDN VLDTGSVPDT DIFGDFEYEL DDEDYIGATK ATKASEAHQD
0901: EGLTKVKVVL STVQPEKVLN QSKVLGNEET TINQEGTTNV EEDGKSFVPM EPVPEAEGEG EGEGGEILSL TECEELYGPG TEKLVEKPLT EGSADNGLQA
1001: KAPDSECESN THREFIASNF EKTSIQEKKL PTRIPNCNPS EKPSKEEKSK ADGFSDSIIK KVEAYIKEHI RPLCKSGVIN VDQYRWAVTK TREKVMKYHS
1101: KAKSANFLIK EGDKIKKLAE QYVETAASSS TGAHHKDKCK
0001: MELDFDASNL VEDEAVEVEH NGMTEIEGER CGICMDIIID RGVLDCCQHW FCFECIDNWS TIMNLCPLCQ REFQLITCVP VFDSGESSKV DEDLVSGDED
0101: CCIEEETDVV SSPSHYIDDT HYIDENAVVC LDGDLCKIRN TFSYIEGDSN LDTSIACDSC DMWYHAICVG FDVENASEDT WVCPRCLSNE KPHEPDTSPM
0201: ETQPDTSLME TRKSLDISEK TNSGCSVEAV YSGNFSVTVA DDGETALVVS IVKGDESHMG PSDTNPLPVQ AKMDGDPDSS HLKILCREEN TEQVAVKSEL
0301: NQSLPHDISS RLSSDSDQPF FAADIENRAD PVVEKDCLSI DDKKNLSTAA ISNSDVASVI SLKRKHSDCS GDDGNSETKP EIYESLNELK LEEEEELTTV
0401: HHESRSPSNN TTVDIFSIVK GTGRRKNLMR SNPTDKSSEA ENAAGLRVKK IKRTPEDEKE SMVLVEKLRK EIREAVRNKS MEDIRENQFD PKLLAAFRAA
0501: VAGPKTGEAP RRSSALAVKA KKLMLQKGKV RENLTKKIYA DLNGKRKSAW HRDCEVEFWK HRCIQGRKPE KIETLKSVLS LLKNKPADTK TNFSSETPQA
0601: SNPILSRLYL ADTSVFPRND NLKPLLAPKE MGNSQNNGKP TEASKTLPKI SAAKGSSVKA AGSKLNSGNK QSDGQPNLTS SNSKEMVENP DDLKKDKRKW
0701: ALQVLARKKA LAGNNSTQDK EGSPELKGNY PLLAQLPADM RPSLATSRHN KVPVAVRQTQ LYRLTEHLLK KENLLTIRRS AATELAVADA INIEKAIADK
0801: SSSKVVYLNL CSQEILHHSE SKTMDNAVEP NSSSPMADSE SERISSKDSD NPAVLEALRA AGLADSPPNS PTRSVEVLPE KGDSSLDKTR ETGPYNVFDM
0901: DSVPDTDIFG DFEYELDEED YFGATMAKKA SVMQPDESLT KVKVVLSTVQ PGKSLNPSEV VEDEETTTEN LNETTNGKED GKSFVPMELV PEAEGEGEGE
1001: GEGEGEGEGG GEILSVAECE ELYGPGTEKL VERPLIEGFA ENGVKAKAPD SECESNTQRE FIASNFEITC IQEKKLPRSI QKCKPSEKPS KEEKGKADGF
1101: GNSITKKVEA YIKEHIRPLC KSGVINVEQY RWAVTKTTEK VMKYHSKAKS ANFLIKEGDK IKKLAEQYVE TASSGAHHKD KCK
0101: CCIEEETDVV SSPSHYIDDT HYIDENAVVC LDGDLCKIRN TFSYIEGDSN LDTSIACDSC DMWYHAICVG FDVENASEDT WVCPRCLSNE KPHEPDTSPM
0201: ETQPDTSLME TRKSLDISEK TNSGCSVEAV YSGNFSVTVA DDGETALVVS IVKGDESHMG PSDTNPLPVQ AKMDGDPDSS HLKILCREEN TEQVAVKSEL
0301: NQSLPHDISS RLSSDSDQPF FAADIENRAD PVVEKDCLSI DDKKNLSTAA ISNSDVASVI SLKRKHSDCS GDDGNSETKP EIYESLNELK LEEEEELTTV
0401: HHESRSPSNN TTVDIFSIVK GTGRRKNLMR SNPTDKSSEA ENAAGLRVKK IKRTPEDEKE SMVLVEKLRK EIREAVRNKS MEDIRENQFD PKLLAAFRAA
0501: VAGPKTGEAP RRSSALAVKA KKLMLQKGKV RENLTKKIYA DLNGKRKSAW HRDCEVEFWK HRCIQGRKPE KIETLKSVLS LLKNKPADTK TNFSSETPQA
0601: SNPILSRLYL ADTSVFPRND NLKPLLAPKE MGNSQNNGKP TEASKTLPKI SAAKGSSVKA AGSKLNSGNK QSDGQPNLTS SNSKEMVENP DDLKKDKRKW
0701: ALQVLARKKA LAGNNSTQDK EGSPELKGNY PLLAQLPADM RPSLATSRHN KVPVAVRQTQ LYRLTEHLLK KENLLTIRRS AATELAVADA INIEKAIADK
0801: SSSKVVYLNL CSQEILHHSE SKTMDNAVEP NSSSPMADSE SERISSKDSD NPAVLEALRA AGLADSPPNS PTRSVEVLPE KGDSSLDKTR ETGPYNVFDM
0901: DSVPDTDIFG DFEYELDEED YFGATMAKKA SVMQPDESLT KVKVVLSTVQ PGKSLNPSEV VEDEETTTEN LNETTNGKED GKSFVPMELV PEAEGEGEGE
1001: GEGEGEGEGG GEILSVAECE ELYGPGTEKL VERPLIEGFA ENGVKAKAPD SECESNTQRE FIASNFEITC IQEKKLPRSI QKCKPSEKPS KEEKGKADGF
1101: GNSITKKVEA YIKEHIRPLC KSGVINVEQY RWAVTKTTEK VMKYHSKAKS ANFLIKEGDK IKKLAEQYVE TASSGAHHKD KCK
Arabidopsis Description
unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plant /.../37; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). [Source:TAIR;Acc:AT4G10930]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.